View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14488_low_12 (Length: 323)

Name: NF14488_low_12
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14488_low_12
NF14488_low_12
[»] chr2 (3 HSPs)
chr2 (1-94)||(11184580-11184673)
chr2 (4-94)||(11191531-11191621)
chr2 (114-172)||(11184402-11184460)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 11184673 - 11184580
Alignment:
Q  1 gtctgggattccatctgtaagtaacttgaaagtttcaacctaaatataaaaagatcaatcaattaaaatatattattttaagtttcaaccttca 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11184673 gtctgggattccatctgtaagtaacttgaaagtttcaacctaaatataaaaagaccaatcaattaaaatatattattttaagtttcaaccttca 11184580  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 11191621 - 11191531
Alignment:
Q  4 tgggattccatctgtaagtaacttgaaagtttcaacctaaatataaaaagatcaatcaattaaaatatattattttaagtttcaaccttca 94  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11191621 tgggatttcatctgtaaataacttgaaagtttcaaactaaatataaaaagatcaatcaataaaaatatattattttaagtatcaaccttca 11191531  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 11184460 - 11184402
Alignment:
Q  114 aaaggaatatttgacaagtacctctaaaaaatgcctttctttaattccttttaataaac 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11184460 aaaggaatatttgacaagtacctctaaaaaatgcctttctttaattccttttaataaac 11184402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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