View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14488_low_2 (Length: 606)
Name: NF14488_low_2
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 530; Significance: 0; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 16 - 592
Target Start/End: Complemental strand, 22900478 - 22899899
Alignment:
| Q |
16 |
atcatgcctttatttaaagctgagaagctccttgcaatgaataacaagaagaaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22900478 |
atcatgcctttatttaaagctgagaagctccttgcaatgaataacaaggaaaaatgtaaaaaatgtttaagctaaacactcgtagggcagctctcctttg |
22900379 |
T |
|
| Q |
116 |
gcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22900378 |
gcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtct |
22900279 |
T |
|
| Q |
216 |
agtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgctactaattctc |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22900278 |
agtttgctaagtatcaaatgacactcccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgctactaattctc |
22900179 |
T |
|
| Q |
316 |
cttttttaagaacaatggcatatgcttgaaggagctagtatcatatatagtcttgaaataagtttttccattaatattctttctttattatttttcatgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22900178 |
cttttttaagaacaatggcatatgcttgaaggagctagtatcatatatagtcttgaaataagtttttccattaagattctttctttattatttttcatgt |
22900079 |
T |
|
| Q |
416 |
tcagcttttagaaatagaatc---atatgctccattttatgaagtggttgagagaccacatccaatgtcataaggtaaaagttatcaccagttcataata |
512 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22900078 |
tcagcttttagaaatagaatcataatatgctccattttatgaagtggttgagagaacacatccaatgtcataaggtaaaagttatcaccacttcataata |
22899979 |
T |
|
| Q |
513 |
tatgaaagagattgcacacaaggaattaaaattttataccgatatgttttcttctcttctgtgtctttgtttgaaattag |
592 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22899978 |
tatgaaagagattgcacaaaaggaattaaaattttataccgatatgttttcttctcttttgtgtctttgtttgaaattag |
22899899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 16 - 592
Target Start/End: Complemental strand, 22882543 - 22881964
Alignment:
| Q |
16 |
atcatgcctttatttaaagctgagaagctccttgcaatgaataacaagaagaaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22882543 |
atcatgcctttatttaaagctgagaagctccttgcaatgaataacaaggagaaatgtaaaaaatgtttaagctaaacactcgtagggcagctctcctttg |
22882444 |
T |
|
| Q |
116 |
gcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtct |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22882443 |
gcaagtgaatttttagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtct |
22882344 |
T |
|
| Q |
216 |
agtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgctactaattctc |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22882343 |
agtttgctaagtatcaaatgacactcccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgctactaattctc |
22882244 |
T |
|
| Q |
316 |
cttttttaagaacaatggcatatgcttgaaggagctagtatcatatatagtcttgaaataagtttttccattaatattctttctttattatttttcatgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22882243 |
cttttttaagaacaatggcatatgcttgaaggagctagtatcatatatagtcttgaaataagtttttccattaagattctttctttattatttttcatgt |
22882144 |
T |
|
| Q |
416 |
tcagcttttagaaatagaatc---atatgctccattttatgaagtggttgagagaccacatccaatgtcataaggtaaaagttatcaccagttcataata |
512 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22882143 |
tcagcttttagaaatagaatcataatatgctccattttatgcagtggttgagagaacacatccaatgtcataaggtaaaagttatcaccacttcataata |
22882044 |
T |
|
| Q |
513 |
tatgaaagagattgcacacaaggaattaaaattttataccgatatgttttcttctcttctgtgtctttgtttgaaattag |
592 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22882043 |
tatgaatgagattgcacaaaaggaattaaaattttatactgatatgttttcttctcttttgtgtctttgtttgaaattag |
22881964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 22915461 - 22914892
Alignment:
| Q |
18 |
catgcctttatttaaagctgagaagctccttgcaatgaataacaagaagaaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggc |
117 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22915461 |
catgcctttatttatagctgagaaactccttgcaatgaataacaaggagaaatgtaaaaaatgtttaagctaaacactcgcagggcagctctcctttggc |
22915362 |
T |
|
| Q |
118 |
aagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtctag |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22915361 |
aagtgaatttctagagcctctaagtcaaatgaaatatcacc--------tgccaatagagacatgccctatgactgatttgcttactttaatgtgtctag |
22915270 |
T |
|
| Q |
218 |
tttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgctactaattctcct |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
22915269 |
tttgctaagtatcaaatgacactcccaacaagttatataggctaattctcaagggttttatgcttaggatatacttctcttgaatgctactacttctcct |
22915170 |
T |
|
| Q |
318 |
tttttaagaacaatggcatatgcttgaaggagctagtatcatatatagtcttgaaataagtttttccattaatattctttctttattatttttcatgttc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22915169 |
tttttaagaacaatggcatatgcttgaaggaactagtatcatatatagtcttgaaataagtttttccattaagattctttctttattatttttcatgttc |
22915070 |
T |
|
| Q |
418 |
agcttttagaaatagaatc---atatgctccattttatgaagtggttgagagaccacatccaatgtcataaggtaaaagttatcaccagttcataatata |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22915069 |
agcttttagaaatagaatcataatatgctccattttatgaagtggttgagagaccacatccaatgtcataaggtaaaatttatcaccacttcataatata |
22914970 |
T |
|
| Q |
515 |
tgaaagagattgcacacaaggaattaaaattttataccgatatgttttcttctcttctgtgtctttgtttgaaattag |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
22914969 |
tgaaagagattgcacacaaggaattaaaatttgataccgatatgttttcttctcatttgtgtctttgtttgaaattag |
22914892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 206 - 530
Target Start/End: Original strand, 22966289 - 22966615
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgct |
305 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22966289 |
taatgtgtctagcttgtcaagtatcgaatgacactcccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttaaatgct |
22966388 |
T |
|
| Q |
306 |
actaattctccttttttaagaacaatggcatatgcttgaaggagct-agtatcatatatagtcttgaaataagtttttccattaatattctttctttatt |
404 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
22966389 |
actaattccccttttttcagaacaatggcatatgcttgaaggagctaaatatcatatgtagtcttgaaataaaaatttccattaagattctttttttatt |
22966488 |
T |
|
| Q |
405 |
atttttcatgttcagcttttagaaatagaatc---atatgctccattttatgaagtggttgagagaccacatccaatgtcataaggtaaaagttatcacc |
501 |
Q |
| |
|
||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
22966489 |
attcttcatgttcagctttttaaaatagaatcacaatatgctccattttatgaagctgttgagagaccacatccaatgtcataagttaaaagtcatcacc |
22966588 |
T |
|
| Q |
502 |
agttcataatatatgaaagagattgcaca |
530 |
Q |
| |
|
| |||||| ||||||||||||||||||| |
|
|
| T |
22966589 |
acttcata--atatgaaagagattgcaca |
22966615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 206 - 530
Target Start/End: Complemental strand, 23822104 - 23821778
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgct |
305 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23822104 |
taatgtgtctagcttgtcaagtatcgaatgacactcccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttaaatgct |
23822005 |
T |
|
| Q |
306 |
actaattctccttttttaagaacaatggcatatgcttgaaggagct-agtatcatatatagtcttgaaataagtttttccattaatattctttctttatt |
404 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
23822004 |
actaattccccttttttcagaacaatggcatatgcttgaaggagctaaatatcatatgtagtcttgaaataaaaatttccattaagattctttttttatt |
23821905 |
T |
|
| Q |
405 |
atttttcatgttcagcttttagaaatagaatc---atatgctccattttatgaagtggttgagagaccacatccaatgtcataaggtaaaagttatcacc |
501 |
Q |
| |
|
||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
23821904 |
attcttcatgttcagctttttaaaatagaatcacaatatgctccattttatgaagctgttgagagaccacatccaatgtcataagttaaaagtcatcacc |
23821805 |
T |
|
| Q |
502 |
agttcataatatatgaaagagattgcaca |
530 |
Q |
| |
|
| |||||| ||||||||||||||||||| |
|
|
| T |
23821804 |
acttcata--atatgaaagagattgcaca |
23821778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 209 - 437
Target Start/End: Complemental strand, 22869492 - 22869263
Alignment:
| Q |
209 |
tgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgctact |
308 |
Q |
| |
|
||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22869492 |
tgtgtctagtttggcaagtatcaagttacactcccaacaagttatataggctaattctctagggttttatgctttggatatacttctcttgagtgctact |
22869393 |
T |
|
| Q |
309 |
aattctccttttttaagaacaatggcatatgcttgaaggagct-agtatcatatatagtcttgaaataagtttttccattaatattctttctttattatt |
407 |
Q |
| |
|
| ||| |||||||| |||||||||| ||||||||||||||||| | ||||||||||| ||||||| | ||||||||||| ||| ||||||||||||| |
|
|
| T |
22869392 |
acttccccttttttcagaacaatgggatatgcttgaaggagctaaatatcatatataatcttgaatttttattttccattaagattttttctttattatt |
22869293 |
T |
|
| Q |
408 |
tttcatgttcagcttttagaaatagaatca |
437 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
22869292 |
tttcatgttcagctttttgaaatagaatca |
22869263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 206 - 513
Target Start/End: Complemental strand, 18127371 - 18127056
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgct |
305 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||| | |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18127371 |
taatgtgtctagtttgccaagtattgaataacactctcaacaagttatataagctaattctcgagggtttaatgctttggatatacttctcttgaatgct |
18127272 |
T |
|
| Q |
306 |
actaattctccttttttaagaacaatggcatatgcttgaaggagctag-tatcatatatagtcttgaaataagtttttccattaatattctttctttatt |
404 |
Q |
| |
|
||| | |||||||| ||||| |||||||||||||||| |||||| |||||||||| |||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
18127271 |
actg---cccctttttttagaacgatggcatatgcttgaaagagctaaatatcatatatggtcttgaatttttattttccattaagattctttctttatt |
18127175 |
T |
|
| Q |
405 |
atttttcatgttcagcttttagaaatagaatc---atatgctccattttatgaagtggttgagagaccacat-------ccaatgtcataaggtaaaagt |
494 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
18127174 |
atttttcaagttcagctttttgaaatagaatcacaatatgctccatttcatgaagttgttgagtgaccacatccaatgaccaatgtcataaggtaaaagt |
18127075 |
T |
|
| Q |
495 |
tatcaccagttcataatat |
513 |
Q |
| |
|
|| |||| |||||||||| |
|
|
| T |
18127074 |
cattaccacttcataatat |
18127056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 206 - 513
Target Start/End: Complemental strand, 22855681 - 22855366
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgct |
305 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||| | |||||||||||||| ||| |||||| ||||||| || |||||||||||||||||||||||| | |
|
|
| T |
22855681 |
taatgtgtctagtttgccaagtattgaataacactctcaacaagttatataagctgattctcgagggtttaattctttggatatacttctcttgaatgat |
22855582 |
T |
|
| Q |
306 |
actaattctccttttttaagaacaatggcatatgcttgaaggagctag-tatcatatatagtcttgaaataagtttttccattaatattctttctttatt |
404 |
Q |
| |
|
||| | |||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||| | ||||||| ||| |||||||||||||| |
|
|
| T |
22855581 |
actg---cccctttttttagaacaatggcatatgcttgaaagagctaaatatcatatattgtcttgaatttttattttccaataagattctttctttatt |
22855485 |
T |
|
| Q |
405 |
atttttcatgttcagcttttagaaatagaatc---atatgctccattttatgaagtggttgagagaccacat-------ccaatgtcataaggtaaaagt |
494 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
22855484 |
atttttcaagttcagctttttgaaatagaatcacaatatgctccatttcatgaagttgttgagtgaccacatccaatgaccaatgtcataaggtaaaagt |
22855385 |
T |
|
| Q |
495 |
tatcaccagttcataatat |
513 |
Q |
| |
|
|| |||| |||||||||| |
|
|
| T |
22855384 |
cattaccacttcataatat |
22855366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 206 - 414
Target Start/End: Original strand, 22984547 - 22984758
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgct |
305 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22984547 |
taatgtgtttagtttgtcaagtatcgaatgacactcccaacaagatatataggctgattctcaagggttttatgctttggatatacttctcttgaatgct |
22984646 |
T |
|
| Q |
306 |
actaattctccttttttaagaacaatggcatatgcttgaaggagct-agtatcatatatagtcttgaaataagtttttcc--attaatattctttcttta |
402 |
Q |
| |
|
|||| ||| |||||||| |||||||||| ||||||||||||||||| | ||||||||||| |||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
22984647 |
actacttccccttttttcagaacaatggaatatgcttgaaggagctaaatatcatatataatcttgaaataaggttttccatattatgattctttcttta |
22984746 |
T |
|
| Q |
403 |
ttatttttcatg |
414 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
22984747 |
ttatatttcatg |
22984758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 206 - 414
Target Start/End: Complemental strand, 23803871 - 23803660
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttctcttgaatgct |
305 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23803871 |
taatgtgtttagtttgtcaagtatcgaatgacactcccaacaagatatataggctgattctcaagggttttatgctttggatatacttctcttgaatgct |
23803772 |
T |
|
| Q |
306 |
actaattctccttttttaagaacaatggcatatgcttgaaggagct-agtatcatatatagtcttgaaataagtttttcc--attaatattctttcttta |
402 |
Q |
| |
|
|||| ||| |||||||| |||||||||| ||||||||||||||||| | ||||||||||| |||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
23803771 |
actacttccccttttttcagaacaatggaatatgcttgaaggagctaaatatcatatataatcttgaaataaggttttccatattatgattctttcttta |
23803672 |
T |
|
| Q |
403 |
ttatttttcatg |
414 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
23803671 |
ttatatttcatg |
23803660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 22869669 - 22869532
Alignment:
| Q |
67 |
aaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacc |
166 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
22869669 |
aaatgtaacaaatgtttaagctaaacactcacagggcagctctcctttggcaagtgaatttctgaagcctctaattcaaatgaaatatcaccatatcacc |
22869570 |
T |
|
| Q |
167 |
tgccaatagagacatgccctatgactgatttgcttact |
204 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22869569 |
taccaatagagacatgccctatgactgatttgcttact |
22869532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 22984356 - 22984510
Alignment:
| Q |
50 |
caatgaataacaagaagaaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatga |
149 |
Q |
| |
|
||||| || ||||| | |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
22984356 |
caatgcatgacaaggaaaaatgtaacaaatgtttaagctaaacgctcacagggcagctctcctttggcaagtgaatttctagagccgccatgtcaaatga |
22984455 |
T |
|
| Q |
150 |
aatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttact |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22984456 |
aatatcaccatatcacttgccaatagagacatgccctatgattgatttgcttact |
22984510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 23804062 - 23803908
Alignment:
| Q |
50 |
caatgaataacaagaagaaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatga |
149 |
Q |
| |
|
||||| || ||||| | |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
23804062 |
caatgcatgacaaggaaaaatgtaacaaatgtttaagctaaacgctcacagggcagctctcctttggcaagtgaatttctagagccgccatgtcaaatga |
23803963 |
T |
|
| Q |
150 |
aatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttact |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23803962 |
aatatcaccatatcacttgccaatagagacatgccctatgattgatttgcttact |
23803908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 22960574 - 22960710
Alignment:
| Q |
67 |
aaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacc |
166 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| | || ||||||||||||||||||||||||| |
|
|
| T |
22960574 |
aaatgtaacaaatgtttaagctaaacactcacagggcagctctcctttggcaggtgaatttatagagcttctaactcaaatgaaatatcaccatatcacc |
22960673 |
T |
|
| Q |
167 |
tgccaatagagacatgccctatgactgatttgcttac |
203 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||| |
|
|
| T |
22960674 |
tgccaatagagtgatgccctacgattgatttgcttac |
22960710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 23827818 - 23827682
Alignment:
| Q |
67 |
aaatgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacc |
166 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| | || ||||||||||||||||||||||||| |
|
|
| T |
23827818 |
aaatgtaacaaatgtttaagctaaacactcacagggcagctctcctttggcaggtgaatttatagagcttctaactcaaatgaaatatcaccatatcacc |
23827719 |
T |
|
| Q |
167 |
tgccaatagagacatgccctatgactgatttgcttac |
203 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||| |
|
|
| T |
23827718 |
tgccaatagagtgatgccctacgattgatttgcttac |
23827682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 22966115 - 22966250
Alignment:
| Q |
69 |
atgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatgaaatatcacc--atatcacc |
166 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||| |
|
|
| T |
22966115 |
atgtaaagaatgtttaagcaaaacactcacagggcagctctcctttggcaagtgaatttctggagcctccaagtgaaatgaaatatcaccatatatcatg |
22966214 |
T |
|
| Q |
167 |
tgccaatagagacatgccctatgactgatttgctta |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22966215 |
tgccaatagagacatgccctatgattgatttgctta |
22966250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 23822278 - 23822143
Alignment:
| Q |
69 |
atgtaaaaaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatgaaatatcacc--atatcacc |
166 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||| |
|
|
| T |
23822278 |
atgtaaagaatgtttaagcaaaacactcacagggcagctctcctttggcaagtgaatttctggagcctccaagtgaaatgaaatatcaccatatatcatg |
23822179 |
T |
|
| Q |
167 |
tgccaatagagacatgccctatgactgatttgctta |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23822178 |
tgccaatagagacatgccctatgattgatttgctta |
23822143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 22855831 - 22855718
Alignment:
| Q |
76 |
aaatgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatag |
175 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
22855831 |
aaatgtctaagctaaacattcatagggcagctctcctttggcaagtgaatttctagagcc---------------atatcactatatcacctgccaatag |
22855747 |
T |
|
| Q |
176 |
agacatgccctatgactgatttgcttact |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22855746 |
agacatgccctatgactgatttgcttact |
22855718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 18127519 - 18127408
Alignment:
| Q |
78 |
atgtttaagctaaacactcatagggcagctctcctttggcaagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagag |
177 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
18127519 |
atgtctaagctaaacattcatagggcagctctcctttggcaagtgaatttctggagcc---------------atatcactatatcacctgccaatagag |
18127435 |
T |
|
| Q |
178 |
acatgccctatgactgatttgcttact |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18127434 |
acatgccctatgactgatttgcttact |
18127408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 22960749 - 22960834
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatac |
291 |
Q |
| |
|
|||| |||| |||||| ||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22960749 |
taatatgtcaagtttgtcaagtatcgaacgacactcccaacaagatatataggctaattctcaagggttttatgctttggatatac |
22960834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 23827643 - 23827558
Alignment:
| Q |
206 |
taatgtgtctagtttgctaagtatcaaatgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatac |
291 |
Q |
| |
|
|||| |||| |||||| ||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23827643 |
taatatgtcaagtttgtcaagtatcgaacgacactcccaacaagatatataggctaattctcaagggttttatgctttggatatac |
23827558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 22788220 - 22788160
Alignment:
| Q |
233 |
atgacacccccaacaagttatataggctaattctcaagggttttatgctttggatatacttc |
294 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
22788220 |
atgacactcccaaaaagttatataggctaatactcg-gggttttatgctttggatatacttc |
22788160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 557 - 592
Target Start/End: Original strand, 22961006 - 22961041
Alignment:
| Q |
557 |
tgttttcttctcttctgtgtctttgtttgaaattag |
592 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22961006 |
tgttttcttctcttttgtgtctttgtttgaaattag |
22961041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 557 - 592
Target Start/End: Complemental strand, 23827386 - 23827351
Alignment:
| Q |
557 |
tgttttcttctcttctgtgtctttgtttgaaattag |
592 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23827386 |
tgttttcttctcttttgtgtctttgtttgaaattag |
23827351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 22984751 - 22984819
Alignment:
| Q |
446 |
attttatgaagtggttgagagaccacatccaatgtcataaggtaaaagttatcaccagttcataatata |
514 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||| |||| |||||||| || || ||||||||||| |
|
|
| T |
22984751 |
atttcatgaagttgttgagtgaccacatccaatgtgataaagtaaaagtcatatgcacttcataatata |
22984819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 23803667 - 23803599
Alignment:
| Q |
446 |
attttatgaagtggttgagagaccacatccaatgtcataaggtaaaagttatcaccagttcataatata |
514 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||| |||| |||||||| || || ||||||||||| |
|
|
| T |
23803667 |
atttcatgaagttgttgagtgaccacatccaatgtgataaagtaaaagtcatatgcacttcataatata |
23803599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 45952631 - 45952587
Alignment:
| Q |
77 |
aatgtttaagctaaacactcatagggcagctctcctttggcaagt |
121 |
Q |
| |
|
||||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
45952631 |
aatgtctaagctaaacactcaaagagcagctctcctttggcaagt |
45952587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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