View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14488_low_20 (Length: 202)
Name: NF14488_low_20
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 38574238 - 38574324
Alignment:
| Q |
103 |
tgagaaatgttagtaaagttagtagattgattatcaaacactttcccatcttgttctgttcaattttaatttccattaatgtatttt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38574238 |
tgagaaatgttagtaaagttagtagattgattatcaaacactttcccaccttgttctgttcaattttaatttccattaatgtatttt |
38574324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 38574141 - 38574196
Alignment:
| Q |
19 |
agctgtaagttcagaacatttccttcagaatcctatgtttcaaattttcaattctg |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38574141 |
agctgtaagttcagaacatttccttcagaatcctatgtttcaaattttcaattctg |
38574196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University