View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14488_low_3 (Length: 531)
Name: NF14488_low_3
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 53781713 - 53782198
Alignment:
| Q |
19 |
tcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcatagtaagcgtttcctttt |
118 |
Q |
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| T |
53781713 |
tcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcatagtaagcgtttcctttt |
53781812 |
T |
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| Q |
119 |
ctacaagcagtgattggaagccaatcatcttgttggtcaaacttggtgaagtgaccaacttcttcaagaatgttttcaatgactttcttcaatggagtag |
218 |
Q |
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| T |
53781813 |
ctacaagcagtgattggaagccaatcatcttgttggtcaaacttggtgaagtgaccaacttcttcaagaatgttttcaatgactttcttcaatggagtag |
53781912 |
T |
|
| Q |
219 |
ctaagggagtgttcataaaacgagaattataagggctttttgtaaagcttattgaatttggagaatgtatttgatgattaacttgaacttgaactggagg |
318 |
Q |
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| T |
53781913 |
ctaagggagtgttcataaaacgagaattataagggctttttggaaagcttattgaatttggagaatgtatttgatgattaacttgaacttgaactggagg |
53782012 |
T |
|
| Q |
319 |
agttgagattgccagagaactctgttttttcactatttccgccacttcctccataatgttaatttgccaaagttttggctttgtgtctcaatcttctttt |
418 |
Q |
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| T |
53782013 |
agttgagattgccagagaactctgttttttcactatttccgccacttcctccataatgttaatttgccaaagttttggctttgtgtctcaatcttctttt |
53782112 |
T |
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| Q |
419 |
ttgaagttaaaattcatgagttagtgtttatgttagcacttagcatatttggttatatatatagtataacataaagacgtgaatgt |
504 |
Q |
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| T |
53782113 |
ttgaagttaaaattcatgagttagtgtttatgttagcacttagcatatttggttatatatatagtataacataaagacgtgaatgt |
53782198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 344 - 481
Target Start/End: Original strand, 2093996 - 2094133
Alignment:
| Q |
344 |
tttttcactatttccgccacttcctccataatgttaatttgccaaagttttggctttgtgtctcaatcttcttttttgaagttaaaattcatgagttagt |
443 |
Q |
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| T |
2093996 |
tttttcactatttccaccacttcctccataatgctaatttgccaaagttttggctttgtgtctcaatcttcttttttgaagttaaaattcatgagttgga |
2094095 |
T |
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| Q |
444 |
gtttatgttagcacttagcatatttggttatatatata |
481 |
Q |
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| T |
2094096 |
gtttatgttagcacttagcatatttggttatatatata |
2094133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 9244052 - 9244133
Alignment:
| Q |
21 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
102 |
Q |
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| T |
9244052 |
accaaccaagaatagtgaaagcaacaggaagaacaagagcttgaataccaatcccagaacaaagagtatgaaaagcagcata |
9244133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 9257719 - 9257800
Alignment:
| Q |
21 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
102 |
Q |
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|||| |||||| | |||||||| | |||||||||||| || |||| ||||| ||||||||||| ||||||||||||||| |
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| T |
9257719 |
accaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcata |
9257800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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