View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14488_low_4 (Length: 474)

Name: NF14488_low_4
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14488_low_4
NF14488_low_4
[»] chr1 (4 HSPs)
chr1 (19-177)||(4679676-4679834)
chr1 (147-248)||(15593801-15593903)
chr1 (19-78)||(29464835-29464894)
chr1 (40-101)||(15593996-15594057)
[»] chr7 (7 HSPs)
chr7 (34-130)||(8658295-8658391)
chr7 (34-126)||(1300391-1300483)
chr7 (40-83)||(8586852-8586895)
chr7 (28-78)||(10495505-10495555)
chr7 (28-78)||(13334499-13334549)
chr7 (28-78)||(8666403-8666453)
chr7 (28-78)||(8672203-8672253)
[»] chr8 (1 HSPs)
chr8 (155-235)||(1767146-1767227)
[»] chr2 (2 HSPs)
chr2 (40-82)||(16663141-16663183)
chr2 (19-80)||(16658642-16658703)
[»] chr4 (1 HSPs)
chr4 (19-78)||(9337016-9337075)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 4679676 - 4679834
Alignment:
Q  19 ataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagca 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679676 ataacgaacagaaagaaatagatgttcttgaggatcatctgaaggagttggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagca 4679775  T
Q  119 caaatcttctttattcagaaaagtgctcaaacatattacttaaattgtttccgttttct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4679776 caaatcttctttattcagaaaagtgctcaaacatattacttaaattgtttctgttttct 4679834  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 15593903 - 15593801
Alignment:
Q  147 aaacatattacttaaattgtttccgttttctgtcttgtttt-tagttttattaacttatttaaagaccttgcttccagataaagatccctctcaggctct 245  Q
    |||||| || ||||||||||||  ||||||||||||||||| |||||||| || | ||||| || |||||||||||| || ||||||||| |||||| ||    
T  15593903 aaacatgttgcttaaattgtttgtgttttctgtcttgttttctagttttagtagcatatttgaaaaccttgcttccaaatcaagatccctatcaggcact 15593804  T
Q  246 tgt 248  Q
    |||    
T  15593803 tgt 15593801  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 29464894 - 29464835
Alignment:
Q  19 ataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 78  Q
    ||||| || ||||||||| | |||||||||||| ||||||| ||||||||||||||||||    
T  29464894 ataacaaaaagaaagaaacagatgttcttgagggtcatctggaggagctggagagcatgt 29464835  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 15594057 - 15593996
Alignment:
Q  40 atgttcttgaggatcatctgaaggagctggagagcatgttggaaaagcttgaagtcaagact 101  Q
    |||||||||||| | || |||||||||| ||||||||||| ||||| |||| ||||||||||    
T  15594057 atgttcttgagggtaatttgaaggagctcgagagcatgttcgaaaaccttgtagtcaagact 15593996  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 8658391 - 8658295
Alignment:
Q  34 aaataaatgttcttgaggatcatctgaaggagctggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttcttt 130  Q
    ||||| ||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||| ||| |||||| |||||||||||||||||    
T  8658391 aaatagatgttgttgaggatcatctgaaggagctggaaatcatgttggaaaagcttgtagtcaatactggcattgagaataagcacaaatcttcttt 8658295  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 1300483 - 1300391
Alignment:
Q  34 aaataaatgttcttgaggatcatctgaaggagctggagagcatgttggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatctt 126  Q
    ||||| ||||| ||||||||||||| |||||||||||||   ||||||||||||||| |||||| ||| ||| |||||| || | ||||||||    
T  1300483 aaatagatgttgttgaggatcatctcaaggagctggagattttgttggaaaagcttgtagtcaatactggcattgagaataaacccaaatctt 1300391  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 8586852 - 8586895
Alignment:
Q  40 atgttcttgaggatcatctgaaggagctggagagcatgttggaa 83  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  8586852 atgttcttgtggatcatctgaaggagcttgagagcatgttggaa 8586895  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 10495505 - 10495555
Alignment:
Q  28 agaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 78  Q
    ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  10495505 agaaaaaaatagatgttcttgagaatcatctggaggagctggagagcatgt 10495555  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 13334499 - 13334549
Alignment:
Q  28 agaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 78  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  13334499 agaaagaaatagatgttcttgagggtcatctcgaggagctggagagcatgt 13334549  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 8666453 - 8666403
Alignment:
Q  28 agaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 78  Q
    ||||||||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  8666453 agaaagaaatagatgttcttgagggttatctggaggagctggagagaatgt 8666403  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 8672203 - 8672253
Alignment:
Q  28 agaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 78  Q
    ||||||||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  8672203 agaaagaaatagatgttcttgagggttatctggaggagctggagagaatgt 8672253  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 1767227 - 1767146
Alignment:
Q  155 tacttaaattgtttccgttttctgtcttgttttt-agttttattaacttatttaaagaccttgcttccagataaagatccct 235  Q
    ||||||||||||||| ||||||| |||||||||| ||||||| |||| ||||| || |||||||||| |||| |||||||||    
T  1767227 tacttaaattgtttctgttttctttcttgttttttagttttagtaacatatttgaaaaccttgcttcaagatcaagatccct 1767146  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 16663141 - 16663183
Alignment:
Q  40 atgttcttgaggatcatctgaaggagctggagagcatgttgga 82  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  16663141 atgttcttgaggatcatctgaaggagcttgagagtatgttgga 16663183  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 16658642 - 16658703
Alignment:
Q  19 ataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgttg 80  Q
    ||||| |||| || |||| | |||||||||||  ||||||||||||| ||||||||||||||    
T  16658642 ataacaaacaaaatgaaacagatgttcttgagtttcatctgaaggagatggagagcatgttg 16658703  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 9337016 - 9337075
Alignment:
Q  19 ataacgaacagaaagaaataaatgttcttgaggatcatctgaaggagctggagagcatgt 78  Q
    ||||| || ||||||||||| |||||||||||| ||||||| |||| || ||||||||||    
T  9337016 ataacaaagagaaagaaatagatgttcttgagggtcatctggaggatctagagagcatgt 9337075  T

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