View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14488_low_6 (Length: 399)
Name: NF14488_low_6
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 14049247 - 14049605
Alignment:
| Q |
10 |
cgaagaatatccaagcaagatagttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaag |
109 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14049247 |
cgaacaatatccaagcaagatcgttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaag |
14049346 |
T |
|
| Q |
110 |
caaaagtttgcaggcttggtggccatcttgattgatttctttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttcttta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14049347 |
caaaagtttgcaggcttggtggccatcttgattgatttgtttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttcttta |
14049446 |
T |
|
| Q |
210 |
agacattcactattgtgatggataggaccaaatgagataatctttggtgagcaatacttataaaatctttcattttgtctcaaaaactttggaacccttt |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14049447 |
agacattcactattgtgatggatgggaccaaatgagat--------------aatacttataaaatctttcattttgtctcaaaaactttggaacccttt |
14049532 |
T |
|
| Q |
310 |
ggatcttaggaattgaaatttgactattttgctcaaactttagttgtgcctcttttagttgggaaagcctttt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14049533 |
ggatcttaggaattgaaatttgactattttgctcaaactttagttgtacctcttttagttgggaaagcctttt |
14049605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 14060618 - 14060990
Alignment:
| Q |
10 |
cgaagaatatccaagcaagatagttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaag |
109 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14060618 |
cgaacaatatccaagcaagatcattgtcattgaatccttcaattgcatcttcagtgaacatgttcttcaattcttcaatattatcttcaatcttgttaag |
14060717 |
T |
|
| Q |
110 |
caaaagtttgcaggcttggtggccatcttgattgatttctttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttcttta |
209 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
14060718 |
caaaagtttgcatgcttggttaccatcttgattgatttctttgccatattcctcaagaaatgtagaggtccatagaagtttgtactgctctccttcttta |
14060817 |
T |
|
| Q |
210 |
agacattcactattgtgatggataggaccaaatgagataatctttggtgagcaatacttataaaatctttcattttgtctcaaaaactttggaacccttt |
309 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
14060818 |
agacatttattattgtgatggatcggaccaaatgatataatctttggtgagcaatacttataaaatctttcattttgtcgcaaaaacttaggaacccttt |
14060917 |
T |
|
| Q |
310 |
ggatcttaggaattgaaatttgactattttgctcaaactttagttgtgcctcttttagttgggaaagcctttt |
382 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
14060918 |
gaatcttaggaattgaaattttactattttgctcaaacttcagttgtgcctcttttagttgggaaatcctttt |
14060990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 15899861 - 15899494
Alignment:
| Q |
15 |
aatatccaagcaagatagttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaagcaaaa |
114 |
Q |
| |
|
|||||||||||||||| || |||||| | |||||||||||||| || |||||||| |||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
15899861 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatcttcaatattatcttcaatctttttaagcaaaa |
15899762 |
T |
|
| Q |
115 |
gtttgcaggcttggtggccatcttgattgatttctttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttctttaagaca |
214 |
Q |
| |
|
| | || |||| || |||||| || |||| ||||||||| || |||||||| | |||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
15899761 |
gcatacatgcttcgttagcatctttatcaatttttttgccataatcagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
15899662 |
T |
|
| Q |
215 |
ttcactattgtgatggataggaccaaatgagataatctttggtgagcaatacttataaaatctttcattttgtctcaaaaactttggaaccctttggatc |
314 |
Q |
| |
|
|| | ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
15899661 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatc |
15899562 |
T |
|
| Q |
315 |
ttaggaattgaaatttgactattttgctcaaactttagttgtgcctcttttagttgggaaagcctttt |
382 |
Q |
| |
|
||||||| |||||| | ||||| | |||||| || |||||||||||| ||||| ||||||||||| |
|
|
| T |
15899561 |
ctaggaatcaaaatttcattatttcgatcaaacctttcttgtgcctctttgagttgcgaaagcctttt |
15899494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 382
Target Start/End: Original strand, 15874208 - 15874575
Alignment:
| Q |
15 |
aatatccaagcaagatagttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaagcaaaa |
114 |
Q |
| |
|
|||||||||||||||| || |||||| | |||||||||||||| || |||||||| ||||||| | | ||||||||||||||||||| |||||||||| |
|
|
| T |
15874208 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatctttttaagcaaaa |
15874307 |
T |
|
| Q |
115 |
gtttgcaggcttggtggccatcttgattgatttctttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttctttaagaca |
214 |
Q |
| |
|
| || || |||| || |||||| || |||| |||| |||| | |||||||| | |||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
15874308 |
gcttacatgcttcgttatcatctttatcaatttttttggcataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
15874407 |
T |
|
| Q |
215 |
ttcactattgtgatggataggaccaaatgagataatctttggtgagcaatacttataaaatctttcattttgtctcaaaaactttggaaccctttggatc |
314 |
Q |
| |
|
|| | ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
15874408 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgaacaatacttataaaatctttcattttgccgcaaaaatattggaaccctttggatc |
15874507 |
T |
|
| Q |
315 |
ttaggaattgaaatttgactattttgctcaaactttagttgtgcctcttttagttgggaaagcctttt |
382 |
Q |
| |
|
|||||||| |||||| || ||||| | |||||| || |||||||||||| ||||| ||||| ||||| |
|
|
| T |
15874508 |
ttaggaatcgaaattcgattatttcgatcaaacctttcttgtgcctctttgagttgcgaaagtctttt |
15874575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 15920889 - 15920522
Alignment:
| Q |
15 |
aatatccaagcaagatagttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaagcaaaa |
114 |
Q |
| |
|
|||||||||||||||| || |||||| | |||||||||||||| || |||||||| |||||||| | | ||||||||||||||||||| |||||||||| |
|
|
| T |
15920889 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatattcaatattatcttcaatctttttaagcaaaa |
15920790 |
T |
|
| Q |
115 |
gtttgcaggcttggtggccatcttgattgatttctttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttctttaagaca |
214 |
Q |
| |
|
| | || |||| || |||||| || |||| ||||||||| | |||||||| | |||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
15920789 |
gcatacatgcttcgttaacatctttatcaatttttttgccataataagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
15920690 |
T |
|
| Q |
215 |
ttcactattgtgatggataggaccaaatgagataatctttggtgagcaatacttataaaatctttcattttgtctcaaaaactttggaaccctttggatc |
314 |
Q |
| |
|
|| | ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
15920689 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatc |
15920590 |
T |
|
| Q |
315 |
ttaggaattgaaatttgactattttgctcaaactttagttgtgcctcttttagttgggaaagcctttt |
382 |
Q |
| |
|
||||||| |||||| | ||||| | |||||| || |||||||||||| ||||| ||||||||||| |
|
|
| T |
15920589 |
ctaggaatcaaaatttcattatttcgatcaaacctttcttgtgcctctttgagttgtgaaagcctttt |
15920522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University