View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14488_low_8 (Length: 372)
Name: NF14488_low_8
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 54600120 - 54599777
Alignment:
| Q |
11 |
gaaaaaatagagtgaaaaggtaatttgtaaatggaatcagggaaattgtaggtttataaccttatatgaagtgctttttatgaagctaaagttatgcagt |
110 |
Q |
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| T |
54600120 |
gaaaaaatagagtgaaaaggtaacttgtaaatggaatcagggcaattgtaggtttataaccttatatgaagtgctttttatg--------------cggt |
54600035 |
T |
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| Q |
111 |
tgatagatagtttatgtaaggtttccacaattgacagtttaacaaatggatagaggagaacccaattcgttattgaatcagaaataaaattgataaagga |
210 |
Q |
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| T |
54600034 |
tgatagatagtttatgtaaggtttccacaattgacagtttaacaaatggatagaggagaacccaattcgttattgaatcagaaataaaattgataaagga |
54599935 |
T |
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| Q |
211 |
gaattcaattagaattg------------cataaaagagaaatagagaagaataagtctagagaattaagtgattattctactagagagtatcaaaaaga |
298 |
Q |
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| T |
54599934 |
gaattcaattagaattggtgttcccggtgcataaaagagaaatagagaagaataagtctagagaattaagtgattattctactagagagtatcaaaagga |
54599835 |
T |
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| Q |
299 |
gaaaagaagactaaatccaaaacttactcgccaaaatttaagtttccttaattttagg |
356 |
Q |
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| T |
54599834 |
gaaaagaagactaaatccaaaacttactcgccacaatttaagtttccttaattttagg |
54599777 |
T |
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