View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14489_low_1 (Length: 431)
Name: NF14489_low_1
Description: NF14489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14489_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 50 - 431
Target Start/End: Complemental strand, 27661974 - 27661586
Alignment:
| Q |
50 |
aaattaatttcacccgcaacaataacaacaatagatcgaaaacttctcaaactcaaatcaccatcattaacaa-caataacaagaaccttcaaacccata |
148 |
Q |
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| T |
27661974 |
aaattaatttcacccgcaacagtaacaacaatagatcgaaaacttctcaaactcatatcaccatcattaaaaaacaataacaagaaccttcaaacccata |
27661875 |
T |
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| Q |
149 |
ttgaagaggatacgcgatttcttgagcgaaaacccaaatcgaaaaatcaaatttaagttttttggatttgagacaaacaatatatgggttttctgggttt |
248 |
Q |
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| T |
27661874 |
ttgaaaaggatacgcgatttcttgagcgaaaacccaaatcgaaaaatcaaatttaagttttttgggtttgagacaaacaatatatgggttttctggattt |
27661775 |
T |
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| Q |
249 |
caacttattggtcttgagagagaggagaagaaaaagaggaatatgtataaatgtgtctgttgtttgttgata-----aaaaat-atatatatagcccttg |
342 |
Q |
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| T |
27661774 |
caacttatcggtcttgagagagaggagaagaaaaagaggaatatgtataactgtgtctgttgtttgttgataaaaataaaaataaaaaacatatcccttg |
27661675 |
T |
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| Q |
343 |
gattgaaaaacatatcttttgtttgtgttgtctcttaggaacagaacatgaagatctgctcagctctcttcttttccctcccctctttt |
431 |
Q |
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| T |
27661674 |
gattgaaaaacatatcttgtgtttgtgttgtctcttaggaacagaacatgaagatctgctcagctctcttctttttcttcccctctttt |
27661586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 88 - 417
Target Start/End: Original strand, 19639229 - 19639554
Alignment:
| Q |
88 |
aaaacttctcaaactcaaatcaccatcattaacaacaataacaagaaccttcaaacccatattgaagaggatacgcgatttcttgagcgaaaacccaaat |
187 |
Q |
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| T |
19639229 |
aaaaattctcaaactcagatcacc-tcattaacaacaataacaagaaccttcaaacccagatttgaaaggatacacgatttcttgagcgaaaacttaaat |
19639327 |
T |
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| Q |
188 |
cgaaaaatcaaatttaagttttttggatttgaga-caaacaatatatgggttttctgggtttcaacttattggtcttgagagagaggagaagaaaaagag |
286 |
Q |
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| T |
19639328 |
caaaaaatcaaatttaagttttatgggtttgaaagcaaacaatatatgggctttatgggtttcaacctgttggtcttgagagagaggaggagaagaagag |
19639427 |
T |
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| Q |
287 |
gaatatgtata--aatgtgtctgttgtttgttgataaaaaatatatatatagcccttggattgaaaaacatatcttttgtttgtgttgtctcttaggaac |
384 |
Q |
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| T |
19639428 |
gaatatgtataacattgtctgtgttgtttgtagatgaaaaacatat------cccttggattgaaaaacgtatcttgtgtttgtgttgtctctaaggcac |
19639521 |
T |
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| Q |
385 |
agaacatgaagatctgctcagctctcttctttt |
417 |
Q |
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| T |
19639522 |
aaaacatgaagatctgctcagctctcttctttt |
19639554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 223 - 389
Target Start/End: Complemental strand, 24845038 - 24844876
Alignment:
| Q |
223 |
aaacaatatatgggttttctgggtttcaacttattggtcttgagagagaggagaagaaaaagaggaatatgtataa--atgtgtctgttgtttgttgata |
320 |
Q |
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| T |
24845038 |
aaacaatatatgggttttttaggttacaacttattggtcttgagagagaggagaagaagaagaggaacgtgtataaccttatttgtgttgtttgtagatg |
24844939 |
T |
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| Q |
321 |
aaaaatatatatatagcccttggattgaaaaacatatcttttgtttgtgttgtctcttaggaacagaac |
389 |
Q |
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| T |
24844938 |
aaaagcatat------tccttggatcgaaaaacatatcttgtgtttgtgttgtctctaaagaacagaac |
24844876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 24845133 - 24845052
Alignment:
| Q |
106 |
atcaccatcattaacaacaataacaagaaccttcaaacccatattgaagaggatacgcgatttcttgagcgaaaacccaaat |
187 |
Q |
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| T |
24845133 |
atcaccatcattaacaataatgaaaacaaccttcaaacccatattgaaaaggatacacaatttcttgagcgaaaatccaaat |
24845052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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