View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14489_low_2 (Length: 376)
Name: NF14489_low_2
Description: NF14489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14489_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 38366252 - 38366584
Alignment:
| Q |
16 |
ataatgttgctgattagtttcgttaggcaggtttattgcgacatatggtacacacataatagtaggcatggctgttggaggtcaagatgtcatttgtgtc |
115 |
Q |
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| T |
38366252 |
ataatgttgctgattagtttcgttaggcaggtttattgcgacatatggtacacacataatagtaggcatggctgttggaggtcaagatgtcatttgtgtc |
38366351 |
T |
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| Q |
116 |
aaacaaaaacattcttcaaaggttcctcctggtgatctcagaagacatttggaggatttaggagattttttattttcagatttaagaagcccttctctac |
215 |
Q |
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| T |
38366352 |
aaacaaaaacattcttcaaaggttcctcctggtgatctcagaagacatttggaggatttaggagattttttattttcagatttaagaagcccttctctac |
38366451 |
T |
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| Q |
216 |
tagagaggaagacaacaacaacagaagccaaacaaaaagtatgtattgagctttattttacatttttacataatattatgctgaaatagttaaaggaccc |
315 |
Q |
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| T |
38366452 |
tagagaggaagacaacaacaacagaagccaaacaaaaagtatgtattgagctt--------------------tattatgctgaaatagttaaaggaccc |
38366531 |
T |
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| Q |
316 |
gagtttcagaccctagcgaaaaagaaaatactaacattacttatctgatgatg |
368 |
Q |
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| T |
38366532 |
gagtttcaaaccctagcgaaaaagaaaatactaacattacttatctgttgatg |
38366584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 34888028 - 34887840
Alignment:
| Q |
37 |
gttaggcaggtttattgcgacatatggtacacacataatagtaggcatggctgttggaggtcaagatgtcatttgtgtcaaacaaaaacattcttcaaag |
136 |
Q |
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|||||||||||| || ||||||||| || |||||| | ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| |
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| T |
34888028 |
gttaggcaggttcatccagacatatggcactcacatagtggtaggcatggctgttggaggtcaagatgtaatctgtgtcaaacaaaaacattcatcaaag |
34887929 |
T |
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| Q |
137 |
gttcctcctggtgatctcagaagacatttggaggatttaggagattttttattttcagatttaagaagcccttctctactagagaggaa |
225 |
Q |
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||||||| |||||| |||| || ||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
34887928 |
attcctcccggtgatgtcaggaggcatttagaggatctaggagattttttattttcagatgtaagaagcccttcttcactacagaggaa |
34887840 |
T |
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