View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14489_low_3 (Length: 354)

Name: NF14489_low_3
Description: NF14489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14489_low_3
NF14489_low_3
[»] chr4 (6 HSPs)
chr4 (14-311)||(34646362-34646649)
chr4 (307-354)||(25483430-25483479)
chr4 (307-354)||(36629331-36629380)
chr4 (307-354)||(39792873-39792922)
chr4 (308-354)||(1731661-1731709)
chr4 (296-354)||(54343010-54343070)
[»] chr5 (1 HSPs)
chr5 (307-354)||(42405613-42405660)
[»] chr1 (1 HSPs)
chr1 (307-354)||(41157085-41157134)
[»] chr8 (3 HSPs)
chr8 (298-354)||(34834970-34835028)
chr8 (296-354)||(1014249-1014309)
chr8 (296-354)||(3669781-3669841)
[»] chr7 (3 HSPs)
chr7 (296-354)||(30245171-30245227)
chr7 (296-354)||(30253586-30253642)
chr7 (307-354)||(37532766-37532815)
[»] chr3 (1 HSPs)
chr3 (307-354)||(54018213-54018262)
[»] chr2 (1 HSPs)
chr2 (308-354)||(36178621-36178669)
[»] chr6 (1 HSPs)
chr6 (307-354)||(14748357-14748402)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 34646362 - 34646649
Alignment:
Q  14 aaaatatggtcagagagctaccatagatcaaatatccatatcaactctatgaagaatgtttacttggaaagcaattcaggacgaagttttccaaag-agt 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| |||    
T  34646362 aaaatatggtcagagagctaccataaatcaaatatccatatcaactttatgaagaatgtttacttggaaagcaattcaggacg-agtttttcaaagtagt 34646460  T
Q  113 caagttcaaaagcaaagaagtcgctcaagcttatacatgttaatgtttatgttaatgtttgtgggtcaatcaagccaaact--ctacgtaaaaatcacaa 210  Q
    |||||||||||||||||||||||||| |||||||||            |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  34646461 caagttcaaaagcaaagaagtcgctcgagcttatac------------atgttaatgtttgtgggtcaatcaagccaaactcactacgtaaaaatcacaa 34646548  T
Q  211 ttttctctttttcgttgatga--nnnnnnnnnnnnnnnnnnntgcatgggtctatttcttgatgctgaaataaaaagtctttactctaccatcaacaacg 308  Q
    |||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  34646549 ttttctctttttcgttgatgatttttttaaaaaaaataaaaatgcatgggtctatttcttgatgctgaaataaaaagtcttta--ctaccatcaacaacg 34646646  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 25483479 - 25483430
Alignment:
Q  307 cgaggctagaacaactacacaagctagaga--caccacactcttacccaa 354  Q
    ||||||||||||||| |||||||| |||||  ||||||||||||||||||    
T  25483479 cgaggctagaacaaccacacaagcaagagagacaccacactcttacccaa 25483430  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 36629380 - 36629331
Alignment:
Q  307 cgaggctagaacaactacacaagctagaga--caccacactcttacccaa 354  Q
    ||||||||||||||| |||||||| |||||  ||||||||||||||||||    
T  36629380 cgaggctagaacaaccacacaagcaagagagacaccacactcttacccaa 36629331  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 39792873 - 39792922
Alignment:
Q  307 cgaggctagaacaactacacaagctagag--acaccacactcttacccaa 354  Q
    ||||||||||||||| |||||||| ||||  |||||||||||||||||||    
T  39792873 cgaggctagaacaaccacacaagcaagagagacaccacactcttacccaa 39792922  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 1731661 - 1731709
Alignment:
Q  308 gaggctagaacaactacacaagctagag--acaccacactcttacccaa 354  Q
    |||||||||||||| |||||||| ||||  |||||||||||||||||||    
T  1731661 gaggctagaacaaccacacaagcaagagaaacaccacactcttacccaa 1731709  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 54343010 - 54343070
Alignment:
Q  296 accatcaacaacgaggctagaacaactacacaagctagag--acaccacactcttacccaa 354  Q
    |||||| ||| ||||||||||||||| || ||||| ||||  |||||||||||||||||||    
T  54343010 accatccacatcgaggctagaacaaccactcaagcaagagagacaccacactcttacccaa 54343070  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 42405613 - 42405660
Alignment:
Q  307 cgaggctagaacaactacacaagctagagacaccacactcttacccaa 354  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||    
T  42405613 cgaggctagaacaaccgcacaagcaagagacaccacactcttacccaa 42405660  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 41157134 - 41157085
Alignment:
Q  307 cgaggctagaacaactacacaagc--tagagacaccacactcttacccaa 354  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  41157134 cgaggctagaacaaccacacaagcaatagagacaccacactcttacccaa 41157085  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 34835028 - 34834970
Alignment:
Q  298 catcaacaacgaggctagaacaactacacaagctagaga--caccacactcttacccaa 354  Q
    |||| ||| ||||||||||||||| |||||||| |||||  ||||||||||||||||||    
T  34835028 catccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttacccaa 34834970  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 1014249 - 1014309
Alignment:
Q  296 accatcaacaacgaggctagaacaactacacaagct--agagacaccacactcttacccaa 354  Q
    |||||| ||| |||||||||||||||  |||||||   |||||||||||||||||||||||    
T  1014249 accatccacatcgaggctagaacaaccgcacaagcaggagagacaccacactcttacccaa 1014309  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 3669841 - 3669781
Alignment:
Q  296 accatcaacaacgaggctagaacaactacacaagctagaga--caccacactcttacccaa 354  Q
    |||||| ||| |||||||||||||||  ||||||| |||||  ||||||||||||||||||    
T  3669841 accatccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaa 3669781  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 30245227 - 30245171
Alignment:
Q  296 accatcaacaacgaggctagaacaactacacaagctagagacaccacactcttacccaa 354  Q
    |||||| ||| ||||||| ||||||| |||||||  |||||||||||||||||||||||    
T  30245227 accatccacatcgaggcttgaacaaccacacaag--agagacaccacactcttacccaa 30245171  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 30253642 - 30253586
Alignment:
Q  296 accatcaacaacgaggctagaacaactacacaagctagagacaccacactcttacccaa 354  Q
    |||||| ||| ||||||| ||||||| |||||||  |||||||||||||||||||||||    
T  30253642 accatccacatcgaggcttgaacaaccacacaag--agagacaccacactcttacccaa 30253586  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 37532766 - 37532815
Alignment:
Q  307 cgaggctagaacaactacacaagctagag--acaccacactcttacccaa 354  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||||||    
T  37532766 cgaggctagaacaacagcacaagctagagagacaccacactcttacccaa 37532815  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 54018213 - 54018262
Alignment:
Q  307 cgaggctagaacaactacacaagct--agagacaccacactcttacccaa 354  Q
    ||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  54018213 cgaggctagaacaaccacacaagcatgagagacaccacactcttacccaa 54018262  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 36178621 - 36178669
Alignment:
Q  308 gaggctagaacaactacacaagctagag--acaccacactcttacccaa 354  Q
    |||||||||||||| |||||||| ||||  |||||||||||||||||||    
T  36178621 gaggctagaacaaccacacaagcaagagagacaccacactcttacccaa 36178669  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 14748357 - 14748402
Alignment:
Q  307 cgaggctagaacaactacacaagctagagacaccacactcttacccaa 354  Q
    ||||||||||||||| |||||||| ||||  |||||||||||||||||    
T  14748357 cgaggctagaacaaccacacaagcaagag--accacactcttacccaa 14748402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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