View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14489_low_4 (Length: 282)

Name: NF14489_low_4
Description: NF14489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14489_low_4
NF14489_low_4
[»] chr3 (1 HSPs)
chr3 (10-271)||(37462095-37462338)
[»] chr2 (35 HSPs)
chr2 (1-271)||(9315644-9315901)
chr2 (12-271)||(9328225-9328470)
chr2 (12-271)||(9320596-9320853)
chr2 (1-262)||(9284450-9284703)
chr2 (140-271)||(12012924-12013054)
chr2 (4-258)||(9061422-9061675)
chr2 (1-75)||(9291730-9291804)
chr2 (140-271)||(11987862-11987992)
chr2 (178-271)||(9291563-9291655)
chr2 (4-120)||(12012812-12012928)
chr2 (4-120)||(11987750-11987866)
chr2 (16-253)||(9294915-9295144)
chr2 (160-271)||(9364242-9364352)
chr2 (161-271)||(12019285-12019391)
chr2 (4-120)||(12006381-12006497)
chr2 (168-271)||(8573931-8574035)
chr2 (9-112)||(7115937-7116040)
chr2 (216-271)||(12006543-12006598)
chr2 (9-75)||(8573794-8573860)
chr2 (5-75)||(10347569-10347639)
chr2 (1-75)||(10352917-10352991)
chr2 (168-271)||(9066038-9066138)
chr2 (5-69)||(9364442-9364506)
chr2 (14-69)||(9065887-9065942)
chr2 (208-271)||(10352735-10352798)
chr2 (181-258)||(9274200-9274276)
chr2 (1-72)||(10335667-10335738)
chr2 (1-75)||(10341157-10341231)
chr2 (11-104)||(9274279-9274372)
chr2 (130-254)||(10371480-10371604)
chr2 (4-57)||(12019151-12019204)
chr2 (213-271)||(19393258-19393321)
chr2 (209-271)||(10335431-10335493)
chr2 (127-247)||(9272296-9272415)
chr2 (213-257)||(10341038-10341082)
[»] scaffold0667 (1 HSPs)
scaffold0667 (9-271)||(4070-4327)
[»] chr1 (6 HSPs)
chr1 (161-271)||(29422938-29423046)
chr1 (130-268)||(29453663-29453799)
chr1 (161-271)||(29443711-29443828)
chr1 (176-251)||(29468200-29468273)
chr1 (5-51)||(29468044-29468090)
chr1 (8-50)||(29453571-29453613)
[»] chr8 (2 HSPs)
chr8 (4-69)||(41966971-41967036)
chr8 (157-271)||(41967126-41967239)
[»] chr4 (2 HSPs)
chr4 (208-267)||(26574525-26574584)
chr4 (1-41)||(26574700-26574740)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 37462338 - 37462095
Alignment:
Q  10 gctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggtatttct 109  Q
    |||||||||||||||| ||||||| || ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  37462338 gctatgatttgtgttgaaagtcttgtatcacctcctttccctgttgataattgtaggaagaaggaggacaggacaagcaagagcaagagaaggtatttct 37462239  T
Q  110 tattgactatgagtttcttttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaag 209  Q
    |                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37462238 t------------------ttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaag 37462157  T
Q  210 gtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37462156 gtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 37462095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9315901 - 9315644
Alignment:
Q  1 ttggatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataa 100  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |     ||||||||| ||||| ||    
T  9315901 ttggatgaagctatgatttgtgttgaaagtcttgtaccaccttccttccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaagagaa 9315802  T
Q  101 ggtatttcttattgactatgagtttcttttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttcta 200  Q
    ||||   |||||  | |||         ||||||||||| ||||||||||||  ||| |||||| |||||||||||||||||||| ||||||||  ||||    
T  9315801 ggta---cttatatattat---------ttgagtttttgctatgtataagttaatgtcagttcaatggacccatcatatgatataagtagttaaactcta 9315714  T
Q  201 tgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||    
T  9315713 tgctaaa-ggtcaaattgaattcttattataggacaaggattccctaattactttaaattctctacctttg 9315644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 9328470 - 9328225
Alignment:
Q  12 tatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggtatttctta 111  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |  |  ||||||||||||||| |||||| |||||     
T  9328470 tatgttttctgttggaagtcttgtaccaccttccttccctgttgataattctaggaagaaggagaatcgtacaagcaagagcaagagaaggtacttctt- 9328372  T
Q  112 ttgactatgagtttcttttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggt 211  Q
    |||| ||||||||  ||||||||||||| ||||||||||||  ||| | |||| ||||||| |||||||||||||| ||||||  |||||||| ||||||    
T  9328371 ttgattatgagtt--ttttgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgct-aaaggt 9328275  T
Q  212 caaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    |||||||||||||  | ||||        |||||||||||||||||||||||||||||||    
T  9328274 caaattgaattct--taatag--------ttctctaattactttgaagtctctacctttg 9328225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 9320853 - 9320596
Alignment:
Q  12 tatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggtatttctta 111  Q
    |||| ||||||||| ||||||| | ||||||||||||||||||||||||| || |||||||||| |  |  |||||||||||| || |||||| || ||     
T  9320853 tatgttttgtgttggaagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgtt- 9320755  T
Q  112 ttgactatgagtttcttttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggt 211  Q
    |||| |||     | ||||||||||||| ||||||| ||||  ||| | |||| |||||||||||||||||||||  ||||||  ||||||||| | |||    
T  9320754 ttgattatactagttttttgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctata-ggt 9320656  T
Q  212 caaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    ||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||    
T  9320655 caaattgaatttttattatcggacaaggatactctaattactttgaagtctctacctttg 9320596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 9284450 - 9284703
Alignment:
Q  1 ttggatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataa 100  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||||||| |  | | |||||||||||||| ||    
T  9284450 ttggatgaagctatgatttgtgttgaaagtcttgtgccaccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaa 9284549  T
Q  101 ggtatttc-ttattgactatgagtttcttttgag-tttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttc 198  Q
    |||| ||| ||||||| ||         | |||| |||||| | ||||||||||  | |||||| | |||||||||||||| || |||||||||||  |     
T  9284550 ggtacttctttattgatta---------tctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtagttaaactt 9284640  T
Q  199 tatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtct 262  Q
    |||  | |||||||||||||||||||| |||| ||||||||| |||| ||||||||||| ||||    
T  9284641 tat-attaaaggtcaaattgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 271
Target Start/End: Original strand, 12012924 - 12013054
Alignment:
Q  140 ttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaagg 239  Q
    |||||||||||||  | | | |||| ||||||||||||||||||||||||||||   || ||| | |||||||||||||||||||| |||||||||||||    
T  12012924 ttatgtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatg-ttaaaggtcaaattgaattcttattataggacaagg 12013022  T
Q  240 attctctaattactttgaagtctctacctttg 271  Q
    ||||||||||||||||||||||||||||||||    
T  12013023 attctctaattactttgaagtctctacctttg 12013054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 9061422 - 9061675
Alignment:
Q  4 gatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggt 103  Q
    |||||||||||| ||| ||||| ||||||  || |||||| |||||||||||||| |||||   |||||||| |  |  ||||||||| ||||| |||||    
T  9061422 gatgaagctatgttttatgttggaagtctcgtatcacctttcttccctgttgatacttgta---agaaggagaatcgtacaagcaagaccaagagaaggt 9061518  T
Q  104 atttcttattgactat--gagtttctttt-gagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttcta 200  Q
    |   |||||||| |||  |||||| |||| ||||||||| ||||||||||||  ||| |||||| |||  ||||||||| ||||||||||||||  ||||    
T  9061519 a---cttattgattatatgagtttttttttgagtttttgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactcta 9061613  T
Q  201 tgctaaaaggtcaaattgaattcttgttataggacaag-----gattctctaattactttgaa 258  Q
    ||||||| ||| ||||||||||||||||||||||||||     ||||||||||||||||||||    
T  9061614 tgctaaa-ggttaaattgaattcttgttataggacaaggatttgattctctaattactttgaa 9061675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9291804 - 9291730
Alignment:
Q  1 ttggatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggag 75  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291804 ttggatgaagctatgatttgtgttgaaagtcttctaccaccttccttccctgttgataattgtaggaagaaggag 9291730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 271
Target Start/End: Original strand, 11987862 - 11987992
Alignment:
Q  140 ttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaagg 239  Q
    |||||||||||||  | | | |||| |||||||||||| ||||||||||||||||  | |||| |||| ||||||||||||||| | |||||||||||||    
T  11987862 ttatgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgttaaa-ggtcaaattgaattcctattataggacaagg 11987960  T
Q  240 attctctaattactttgaagtctctacctttg 271  Q
    ||| ||||||||||||||||||||||||||||    
T  11987961 attttctaattactttgaagtctctacctttg 11987992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 9291655 - 9291563
Alignment:
Q  178 atgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    |||||| ||||||||||  ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9291655 atgatacatgtagttaaactctatgctaaa-ggttaaattgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 9291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 12012812 - 12012928
Alignment:
Q  4 gatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggt 103  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||| | |    |||||||||||||||| |||||    
T  12012812 gatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagagcaagagaaggt 12012911  T
Q  104 atttcttattgactatg 120  Q
    | |||||||||| ||||    
T  12012912 acttcttattgattatg 12012928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 11987750 - 11987866
Alignment:
Q  4 gatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggt 103  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||| | |    |||||||||| ||||| |||||    
T  11987750 gatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggt 11987849  T
Q  104 atttcttattgactatg 120  Q
    | |||||||||| ||||    
T  11987850 acttcttattgattatg 11987866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 9294915 - 9295144
Alignment:
Q  16 atttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggtatttctt-attg 114  Q
    |||| ||||| ||||||  || |||||||||||||||||||||||| ||| ||||||||| |  | | |||||||||||||| |||||| ||||| ||||    
T  9294915 atttatgttgaaagtctcgtagcaccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattg 9295014  T
Q  115 actatgagtttcttttgagttttt-gttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtca 213  Q
    | |||          ||||||||| | | ||||||||||  | |||||| | |||||||||||||| || ||||| |||||  ||||||||||| |||||    
T  9295015 attatc---------tgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaactctatgctaaa-ggtca 9295104  T
Q  214 aattgaattcttgttataggacaaggattctctaattact 253  Q
    |||||||||||| |||||||||| || |||||||||||||    
T  9295105 aattgaattcttattataggacaggggttctctaattact 9295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 9364352 - 9364242
Alignment:
Q  160 gttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaag 259  Q
    ||||| || ||||||||||||||||||||| ||||  |||||  |||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  9364352 gttcaatgaacccatcatatgatatatgtacttaaactctatattaaa-ggtcaaatggaattcttattataggacaaggagtctctaattactttgaag 9364254  T
Q  260 tctctacctttg 271  Q
    ||| ||||||||    
T  9364253 tctatacctttg 9364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 12019285 - 12019391
Alignment:
Q  161 ttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaagt 260  Q
    |||| |||||||||||||||||||||||||||||  |||||| |||    |  | | |||||||| ||||||||||||||||||||||||||||||||||    
T  12019285 ttcaatggacccatcatatgatatatgtagttaaactctatgttaa----tgtattggaattcttattataggacaaggattctctaattactttgaagt 12019380  T
Q  261 ctctacctttg 271  Q
    |||||||||||    
T  12019381 ctctacctttg 12019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 12006381 - 12006497
Alignment:
Q  4 gatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggt 103  Q
    |||||||| ||||||||||||| ||||||| |||  ||||||||||||||||| ||||||| |||||||||| |  |  ||||||||||||||| |||||    
T  12006381 gatgaagcgatgatttgtgttggaagtcttgtactgccttccttccctgttgagaattgtacgaagaaggagaatcgtacaagcaagagcaagagaaggt 12006480  T
Q  104 atttcttattgactatg 120  Q
    | |||||||||| ||||    
T  12006481 acttcttattgattatg 12006497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 8573931 - 8574035
Alignment:
Q  168 gacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgtta--taggacaaggattctctaattactttgaagtctcta 265  Q
    ||||||||||||||||||||| |||||  ||||||||||| ||||||||| ||||||| | |  ||||||||||||||||||||||||||||||| | ||    
T  8573931 gacccatcatatgatatatgtggttaaactctatgctaaa-ggtcaaattaaattcttatcacataggacaaggattctctaattactttgaagtttata 8574029  T
Q  266 cctttg 271  Q
    ||||||    
T  8574030 cctttg 8574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 7115937 - 7116040
Alignment:
Q  9 agctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggtatttc 108  Q
    |||| |||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |     ||||||||||||||| |||||| |||    
T  7115937 agctttgatttgttttgaaagccttgtaccaccttccttccctgttgataattgtaggaagaaggagaatcatacaagcaagagcaagagaaggtacttc 7116036  T
Q  109 ttat 112  Q
    ||||    
T  7116037 ttat 7116040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 12006543 - 12006598
Alignment:
Q  216 ttgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  12006543 ttgaattcttattttaggacaaggattctctaattactttgaagtctctacctttg 12006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 8573794 - 8573860
Alignment:
Q  9 agctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggag 75  Q
    ||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  8573794 agctatgttttgtgttggaagtcttgtaccacctttcttccctgttgataattgtaggaaggaggag 8573860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 10347639 - 10347569
Alignment:
Q  5 atgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggag 75  Q
    ||||| ||||| ||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  10347639 atgaaactatgttttgtgttggaagtcttgtcccaccttccttccctgttgataatcgtaggaagaaggag 10347569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10352991 - 10352917
Alignment:
Q  1 ttggatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggag 75  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||| |||||    
T  10352991 ttggatgacactatgatttgtgttggaagtcttgtaccaccttacttccctgttgataatcgtaggaagcaggag 10352917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 9066038 - 9066138
Alignment:
Q  168 gacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacc 267  Q
    ||||||||||||||||||||||| |||   || |||| || |||||||||||| |||| | |||||| || |||||||||||||||||||||| ||||||    
T  9066038 gacccatcatatgatatatgtagctaaa--ctttgctcaa-ggtcaaattgaagtcttatcataggataaagattctctaattactttgaagtttctacc 9066134  T
Q  268 tttg 271  Q
    ||||    
T  9066135 tttg 9066138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 9364506 - 9364442
Alignment:
Q  5 atgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaag 69  Q
    |||||||||||||||||||||  |||||| |||||||||| || |||||||||||||||||||||    
T  9364506 atgaagctatgatttgtgttggtagtcttgtaccaccttctttacctgttgataattgtaggaag 9364442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 9065887 - 9065942
Alignment:
Q  14 tgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaag 69  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||    
T  9065887 tgatttgtgttgaaagtcttgtaccaacttccttccctgttgataattgtaggaag 9065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 10352798 - 10352735
Alignment:
Q  208 aggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||| |||| ||||||||    
T  10352798 aggtcaaattgaattcttatcataggataaggattctctaattactttgacgtctttacctttg 10352735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 9274276 - 9274200
Alignment:
Q  181 atatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaa 258  Q
    ||||||||||||||  | ||||||||| |||||  |||||||||| ||||||||||||||||| ||||||||||||||    
T  9274276 atatatgtagttaaactttatgctaaa-ggtcatgttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10335738 - 10335667
Alignment:
Q  1 ttggatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaag 72  Q
    ||||||||  ||||||||||||||| ||||||| |  |||||||||| |||||||||||| |||||||||||    
T  10335738 ttggatgacactatgatttgtgttggaagtcttgtttcaccttccttacctgttgataatcgtaggaagaag 10335667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10341231 - 10341157
Alignment:
Q  1 ttggatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggag 75  Q
    |||||||| |||||||| ||||||| |||| |  ||||||||| |||||||||||| ||| ||||||||||||||    
T  10341231 ttggatgatgctatgatgtgtgttggaagtatagtaccacctttcttccctgttgacaatcgtaggaagaaggag 10341157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 9274372 - 9274279
Alignment:
Q  11 ctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggta 104  Q
    |||| ||||| |||| |||| || ||||||| ||||||||||||||||||| ||||||||||||| |     ||||||||||||||| ||||||    
T  9274372 ctattatttgggttggaagttttgtaccaccctccttccctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggta 9274279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 10371604 - 10371480
Alignment:
Q  130 tgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgtta 229  Q
    |||||||||||| ||||||||||  | | |||||| |||| ||||||||| ||||||| ||||||  ||| || | |||||||||||||||||||| | |    
T  10371604 tgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattatatatgcagttaaactctgtg-ttaaaggtcaaattgaattcttatca 10371506  T
Q  230 ta-ggacaaggattctctaattactt 254  Q
    || ||  ||||||| |||||||||||    
T  10371505 tagggtaaaggattttctaattactt 10371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 12019151 - 12019204
Alignment:
Q  4 gatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgat 57  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||| |||| ||||    
T  12019151 gatgaagccatgatttgtgttggaagtcttgtaccaccttccttacctgctgat 12019204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 19393258 - 19393321
Alignment:
Q  213 aaattgaattcttgttataggacaaggatt-----ctctaattactttgaagtctctacctttg 271  Q
    ||||||||||||| |||||||| |||||||     ||||||||||||||||||||| |||||||    
T  19393258 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 19393321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 10335493 - 10335431
Alignment:
Q  209 ggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    ||||||||||||||||| | ||||||  ||||||||||||||||| || ||||  ||||||||    
T  10335493 ggtcaaattgaattcttatcataggatgaggattctctaattactctggagtcgttacctttg 10335431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 9272415 - 9272296
Alignment:
Q  127 ttttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttg 226  Q
    |||| |||||||| ||||||||||||  ||| |||| | || |||||||||||||| | || | ||||   | ||||| ||||||| ||||||||||||     
T  9272415 tttttagtttttgctatgtataagttaatgtcagtttaatgaacccatcatatgatctttgcaattaaacccaatgct-aaaggtctaattgaattctta 9272317  T
Q  227 ttataggacaaggattctcta 247  Q
    |||||| |  |||||||||||    
T  9272316 ttatagaaataggattctcta 9272296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 10341082 - 10341038
Alignment:
Q  213 aaattgaattcttgttataggacaaggattctctaattactttga 257  Q
    ||||||||||||| | |||||| ||||||||||||||||| ||||    
T  10341082 aaattgaattcttatcataggataaggattctctaattaccttga 10341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 4327 - 4070
Alignment:
Q  9 agctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaagaaggaggacaggtcaagcaagagcaagataaggtatttc 108  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||||||| |     || |||||||||||| ||||||   |    
T  4327 agctaagatttgtgttggaagtcttgtaccaccttcctttcctgttgataattctagtaagaaggagaatcatacatgcaagagcaagaaaaggta---c 4231  T
Q  109 ttattgactat-gagtttcttttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaa 207  Q
    ||||||| ||| ||||||  ||| |||||||| | ||||||||||  | |  ||||| ||||||||||||||||| ||| |||||||  ||| |||||||    
T  4230 ttattgattatcgagttt--tttcagtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaa 4133  T
Q  208 aggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 271  Q
    |  ||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||    
T  4132 ac-tcaaattgaattcttattataggaaaaggattctataattactttgaattctctacctttg 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 29423046 - 29422938
Alignment:
Q  161 ttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaagt 260  Q
    |||| |||||| |||||||||||||| |||||||  ||| |  |||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||    
T  29423046 ttcaatggaccgatcatatgatatatctagttaaactctgt--taaaaggtcaaattgaattcttattatatgacaatgattctctaattattttgaagt 29422949  T
Q  261 ctctacctttg 271  Q
    |||||||||||    
T  29422948 ctctacctttg 29422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 29453663 - 29453799
Alignment:
Q  130 tgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgtta 229  Q
    |||||||||| | ||||||||||  | | |||||| | || ||||||||||||||||| ||||||  | |||| ||||||   ||||||||||||| |||    
T  29453663 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaagt--aaattgaattcttatta 29453760  T
Q  230 taggacaaggattctctaattactttgaagtctctacct 268  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  29453761 tagaacaaggattctctaattactttgaagtctctacct 29453799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 29443711 - 29443828
Alignment:
Q  161 ttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattct-------tgttataggacaaggattctctaattact 253  Q
    |||| ||||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||       | | ||||||||||||||||||||||| |    
T  29443711 ttcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaaggattctctaattatt 29443810  T
Q  254 ttgaagtctctacctttg 271  Q
    ||||||||||||||||||    
T  29443811 ttgaagtctctacctttg 29443828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 29468200 - 29468273
Alignment:
Q  176 atatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaatta 251  Q
    |||||||||||| ||||||  ||| |  |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  29468200 atatgatatatgcagttaaactctgt--taaaaggtcaaattgaattcttattataggacaatgattctctaatta 29468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 29468044 - 29468090
Alignment:
Q  5 atgaagctatgatttgtgttgcaagtcttctaccaccttccttccct 51  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  29468044 atgaagctatgatttgtgttggaagtcttgtaccaccttccttccct 29468090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 29453571 - 29453613
Alignment:
Q  8 aagctatgatttgtgttgcaagtcttctaccaccttccttccc 50  Q
    |||||||||||||||||| ||||||| | ||||||||||||||    
T  29453571 aagctatgatttgtgttggaagtcttgtgccaccttccttccc 29453613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 41966971 - 41967036
Alignment:
Q  4 gatgaagctatgatttgtgttgcaagtcttctaccaccttccttccctgttgataattgtaggaag 69  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||    
T  41966971 gatgaagccatgttttgtgttggaagtcttgtaccaccttccttccctgttgttaattgtaagaag 41967036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 41967126 - 41967239
Alignment:
Q  157 ttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttg 256  Q
    ||||| || |||||||||||||  ||| ||||| ||||  |||||| |||| ||| ||||||||||||| |||||||| ||  ||||||||||||||| |    
T  41967126 ttagtgcaatggacccatcatacaatacatgtacttaaactctatgttaaa-ggttaaattgaattcttattataggataactattctctaattacttcg 41967224  T
Q  257 aagtctctacctttg 271  Q
    ||| || ||||||||    
T  41967225 aaggctttacctttg 41967239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 26574584 - 26574525
Alignment:
Q  208 aggtcaaattgaattcttgttataggacaaggattctctaattactttgaagtctctacc 267  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||| |||| ||||    
T  26574584 aggtcaaattgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26574740 - 26574700
Alignment:
Q  1 ttggatgaagctatgatttgtgttgcaagtcttctaccacc 41  Q
    |||||||| |||||||||||||||| ||||||| |||||||    
T  26574740 ttggatgacgctatgatttgtgttggaagtcttgtaccacc 26574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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