View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14490_high_2 (Length: 334)
Name: NF14490_high_2
Description: NF14490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14490_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 334
Target Start/End: Original strand, 4748859 - 4749162
Alignment:
| Q |
31 |
gcttcagctatggcacttgcagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtc |
130 |
Q |
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| T |
4748859 |
gcttcagctatggcacttgcagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtc |
4748958 |
T |
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| Q |
131 |
acgaattgtacaattatattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagagac |
230 |
Q |
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| T |
4748959 |
acgaattgtacaattatattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagaggc |
4749058 |
T |
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| Q |
231 |
caaaaagttcacttttgatgtcatcacttctgttttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgatttgctt |
330 |
Q |
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| T |
4749059 |
caaaaagttcacttttgatgtcatcacttctgtcttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgatttgctt |
4749158 |
T |
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| Q |
331 |
cgag |
334 |
Q |
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|||| |
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| T |
4749159 |
cgag |
4749162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 330
Target Start/End: Original strand, 4756713 - 4756996
Alignment:
| Q |
50 |
cagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtcacgaa---ttgtacaatta |
146 |
Q |
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| T |
4756713 |
caggtaaaagatcattccatggaatctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaactta |
4756812 |
T |
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| Q |
147 |
tattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagagaccaaaaagttcactttt |
246 |
Q |
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| T |
4756813 |
tattagtctcattgaggatagtgctgtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgctttt |
4756912 |
T |
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| Q |
247 |
gatgtcatcacttctgttttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgatttgctt |
330 |
Q |
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| T |
4756913 |
gaagtcatcactaccatcttcatttcttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgctt |
4756996 |
T |
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