View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14491_high_1 (Length: 541)
Name: NF14491_high_1
Description: NF14491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14491_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 221 - 524
Target Start/End: Complemental strand, 3765245 - 3764939
Alignment:
| Q |
221 |
ttacaataattttgattttgtcttaaatataattatctt---tattaaattatatttaccaataggatggatgatctagagcaaacgatgaatcgggcta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
3765245 |
ttacaataattttgattttgtcttaaatataattatcatccttattaaattatatttaccaataggatggatgatctagagcgaacaatgaatcgggcta |
3765146 |
T |
|
| Q |
318 |
gctcgtttaatttgattcttaaatcaaatgaattgaaattaagatgtaaattaagttcattatctaaataaattgaatttgaattctatgttatttgatt |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3765145 |
actcgtttaatttgattcctaaatcaaatgaattgaaattaagatacatattaagttcattatctaaataaattgaatttgaattctatgttatttgatt |
3765046 |
T |
|
| Q |
418 |
cgtttgattcatgagtatttaaatgtggaagagtattttgagaactctcaaatctatgtatgaaattttattggtttttgtctcatttagttacactagt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3765045 |
cgtttgattcatgagtatttaaatgtggaagagtattttgagaactctcaaatctatgtatgaaattttattggtttttgtctcatttagatacactagt |
3764946 |
T |
|
| Q |
518 |
tttgatg |
524 |
Q |
| |
|
||||||| |
|
|
| T |
3764945 |
tttgatg |
3764939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 3766142 - 3765923
Alignment:
| Q |
9 |
tcgaagaatataccgaaaataatgcaagatgttttgtatcattatacatatttgatttgatgtcttttctcatacactcgtggaaaacctctcatgtcac |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3766142 |
tcgaaaaatataccgaaaataatgcaagatgttttgtatcattatacatatttgatttgatgtcttttctcatacactcgtggaaaacctctcatgtcac |
3766043 |
T |
|
| Q |
109 |
aacttgtacgcaaacaaacaattggctaaggatggtacgttctgatcacgggaccctaggcttagacta-----gatgcatatattttaataattggaca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3766042 |
aacttgtacgcaaacaaacaattggctaaggatggtacgttcagatcacgggaccctaggcttagactagatgtgatgcatatattttaataattggaca |
3765943 |
T |
|
| Q |
204 |
ataatgaagaaggacaatta |
223 |
Q |
| |
|
|||||| |||||| |||||| |
|
|
| T |
3765942 |
ataatggagaaggccaatta |
3765923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 25582625 - 25582680
Alignment:
| Q |
320 |
tcgtttaatttgattcttaaatcaaatgaattgaaattaagatgtaaattaagttc |
375 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| || || || ||||||||||| |
|
|
| T |
25582625 |
tcgttaaatttgattcataaatcaaatgaattgaatttgagttgaaaattaagttc |
25582680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 46505894 - 46505930
Alignment:
| Q |
324 |
ttaatttgattcttaaatcaaatgaattgaaattaag |
360 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
46505894 |
ttaatttgattcataaatcaaattaattgaaattaag |
46505930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University