View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14491_high_3 (Length: 243)
Name: NF14491_high_3
Description: NF14491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14491_high_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 781933 - 782159
Alignment:
| Q |
17 |
aaactttactcaatagtccccacgaaagcaaaacaaggactaaaattgaataaaatttacgcagggactaagcataaaaggtcgtgaattttatagacaa |
116 |
Q |
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| T |
781933 |
aaactttactcaatagtccccacgaaagcaaaacaaggactaaaattgaataaaatttatgcagggactaagcataaaaggtcgtgaattttatagacaa |
782032 |
T |
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| Q |
117 |
catatatatacttatttaaataattgaggaagagaaaaatgtggctaagatatagtatgttacctcctatataggcaagccaaggattgaatgttcgaga |
216 |
Q |
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| T |
782033 |
catatatatacttatttaaataatcgaggaagagaaaaatgtggctaagatatagtatgttacctcctatataggcaagccaaggattgaatgttcgaga |
782132 |
T |
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| Q |
217 |
gctatgtataagatccgttttggctgc |
243 |
Q |
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| T |
782133 |
gctatgtataagatccgttttggctgc |
782159 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 44064568 - 44064539
Alignment:
| Q |
46 |
aaaacaaggactaaaattgaataaaattta |
75 |
Q |
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| T |
44064568 |
aaaacaaggactaaaattgaataaaattta |
44064539 |
T |
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