View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14492_high_1 (Length: 716)
Name: NF14492_high_1
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 12 - 698
Target Start/End: Original strand, 4555526 - 4556214
Alignment:
| Q |
12 |
agagacacaaaattgacaaaatgatcctgtgacatcacctctacagtcatagaatccatagacagcatcaactgtgttgtctcctatgcttgtgtgatta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4555526 |
agagacacaaaattgacaaaatgatcctgtgacatcacctctacagtcatagagtccatagacagcatcaactgtgttgtctcctatgcttgtgtgatta |
4555625 |
T |
|
| Q |
112 |
tatcctttacttacaatagcatcagaggtgagcgatgaaaggactatattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgac |
211 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555626 |
tatcctttacttacaataccatcaaaggtgagcgatgaaaggaatttattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgac |
4555725 |
T |
|
| Q |
212 |
aatcatcacctacataatttgttgtttatcattatatgtttcatgattggtgccataaccctttcttatgttggggtcggttaactgttgttattaccgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |
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|
| T |
4555726 |
aatcatcacctacataatttgttgtttatcattatatgtttcatgattggtgccataaccctttcttatgctggggtcggctatctgttgttattaccgt |
4555825 |
T |
|
| Q |
312 |
tgaaacattgaagtaattaatagctatctcctttggcacaccttgtgctggggatttaatatatttcattttga-tttnnnnnnnnnnngtggtctannn |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4555826 |
tgaaacattgaagtaattaatagctatctcctttggcacaccttgtgctggggatttaatatatttcattttgattttaaaaaaaaaaagtggtctattt |
4555925 |
T |
|
| Q |
411 |
nnnnnnatcata-ttctatttgtaaattttattatgaaataaacttttgagaacaaatctttcaagactctaaaaatgtcataccatacataaacggtag |
509 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4555926 |
ttttttatcatatttctatttgtaaattttattatgaaataaacttttgagaacaaatctttcaagactctaaaaatgtcataccatacataaacagtag |
4556025 |
T |
|
| Q |
510 |
cttctgatatggtggtgctggcctcttcttccatggattgtaagttggaaattgtcgtaactcttccttaaaatttcgtaactcatcctcaaaagnnnnn |
609 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
4556026 |
cttctgatatggtggtgctggcctcttctcccatggattgtaaattggagatcgtcgtaactgttcctcaaaatttcgtaactcgtcctcaaaagaaaaa |
4556125 |
T |
|
| Q |
610 |
nnncgtcgtaactctgtctcaaaatttctaaaaggtgctattctcttcttcgaaggtggtacctcttcctcaaaagaaaaagaaggtgg |
698 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4556126 |
aaacgtcgtaactctttctcaaaatttctaaaaggtgctattctcttcttcgaaggtggtacctcttcctcaaaagaaaaagaaggtgg |
4556214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 3075644 - 3075425
Alignment:
| Q |
13 |
gagacacaaaattgacaaaatgatcctgtgacatcacctctacagtcatagaatccatagacagcatcaactgtgttgtctcctatgcttgtgtgattat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
3075644 |
gagacacaaaattgacaaaatgatcctgttacatcacctctacaatcatacagaccatagacagcatcaactgtattgtcacctatacttgtatgattat |
3075545 |
T |
|
| Q |
113 |
atcctttacttacaatagcatcagaggtgagcgatgaaaggactatattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgaca |
212 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
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|
| T |
3075544 |
atcctttacttacaatagcatcagatgagagcaatgaaaggactttattaaggttggatttgtatgtagttgtaagtgatttttcagttgaattgtgaca |
3075445 |
T |
|
| Q |
213 |
atcatcacctacataatttg |
232 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3075444 |
atcatcacctacataatttg |
3075425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 3086186 - 3085966
Alignment:
| Q |
12 |
agagacacaaaattgacaaaatgatcctgtgacatcacctctacagtcatagaatccatagacagcatcaactgtgttgtctcctatgcttgtgtgatta |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||| |||||| |
|
|
| T |
3086186 |
agagacacaaaattgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtatgatta |
3086087 |
T |
|
| Q |
112 |
tatcctttacttacaatagcatcagaggtgagcgatgaaaggactatattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||||| |||||||||| ||||||||||||| |||||| |||||||| |||| | ||||| |
|
|
| T |
3086086 |
tatcctttacttacaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgac |
3085987 |
T |
|
| Q |
212 |
aatcatcacctacataatttg |
232 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3085986 |
aatcatcacctacataatttg |
3085966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 424 - 558
Target Start/End: Original strand, 4539332 - 4539467
Alignment:
| Q |
424 |
tctatttgtaaattttattatgaaataaacttttgagaacaaatctttcaa-gactctaaaaatgtcataccatacataaacggtagcttctgatatggt |
522 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| || | |||||||| || |||||||||| ||||||||| |||| | |||||||||||| ||||| |
|
|
| T |
4539332 |
tctatttgaaaactttattatgaaataaactttttagtataaatcttttaaagactctaaaagtgtcataccttacacacgtggtagcttctgaaatggt |
4539431 |
T |
|
| Q |
523 |
ggtgctggcctcttcttccatggattgtaagttgga |
558 |
Q |
| |
|
||| | |||||||||| | || |||||||||||| |
|
|
| T |
4539432 |
ggttgtagcctcttctttgaaggcttgtaagttgga |
4539467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 30406195 - 30406147
Alignment:
| Q |
227 |
aatttgttgtttatcattatatgtttcatgattggtgccataacccttt |
275 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
30406195 |
aatttgttgtttttcattataagtttcatgattggtgccagaacccttt |
30406147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 31966666 - 31966601
Alignment:
| Q |
299 |
ttgttattaccgttgaaacattgaagtaattaatagctatctcctttggcacaccttgtgctgggg |
364 |
Q |
| |
|
|||||||| | |||||||||||| ||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
31966666 |
ttgttattgctgttgaaacattgttgtaattattagctatctcatttgacacaccttgtgctgggg |
31966601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 25096060 - 25095932
Alignment:
| Q |
240 |
tcattatatgtttcatgattggtgccataaccctttcttatgttgggg--tcggttaactgttgttattaccgttgaaacattgaagtaattaatagcta |
337 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||| ||| | || ||| |||||||| |||||| | ||| |||| |||| |||| |
|
|
| T |
25096060 |
tcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaactactgatgtaaataattgcta |
25095961 |
T |
|
| Q |
338 |
tctcctttggcacaccttgtgctggggat |
366 |
Q |
| |
|
| |||||||| | |||||||||||||||| |
|
|
| T |
25095960 |
tatcctttggtataccttgtgctggggat |
25095932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 25154030 - 25153902
Alignment:
| Q |
240 |
tcattatatgtttcatgattggtgccataaccctttcttatgttgggg--tcggttaactgttgttattaccgttgaaacattgaagtaattaatagcta |
337 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||| ||| | || ||| |||||||| |||||| | ||| |||| |||| |||| |
|
|
| T |
25154030 |
tcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaactactgatgtaaataattgcta |
25153931 |
T |
|
| Q |
338 |
tctcctttggcacaccttgtgctggggat |
366 |
Q |
| |
|
| |||||||| | |||||||||||||||| |
|
|
| T |
25153930 |
tatcctttggtataccttgtgctggggat |
25153902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 31250924 - 31250960
Alignment:
| Q |
252 |
tcatgattggtgccataaccctttcttatgttggggt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31250924 |
tcatgattggtgccataaccctttcttatgtttgggt |
31250960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 364
Target Start/End: Original strand, 10383341 - 10383480
Alignment:
| Q |
227 |
aatttgttgtttatcattatatgtttcatgattggtgccataaccctttcttatgttgggg--tcggttaactgttgttattaccgttgaaacattgaag |
324 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |||| |||| ||||| ||| | || ||||| || ||||||| ||||||||||| | |
|
|
| T |
10383341 |
aatttgtaatttatcattataagtttcatgattggtgccaaaacctgttctcatgtttgggaataggctaactattattattactattgaaacattgttg |
10383440 |
T |
|
| Q |
325 |
taattaatagctatctcctttggcacaccttgtgctgggg |
364 |
Q |
| |
|
|| ||| | |||||||| |||| |||||||| || ||||| |
|
|
| T |
10383441 |
tagttatttgctatctcttttgccacaccttatgttgggg |
10383480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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