View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_high_17 (Length: 379)
Name: NF14492_high_17
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 6034577 - 6034225
Alignment:
| Q |
17 |
tactcgacgagcttaaaagtgttacctaattatccaacaaaggtttccaagtagacattctcttagaattagtctcaaccagaagacctatttactttaa |
116 |
Q |
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| T |
6034577 |
tactcgacgagcttaaaagtgttacctagttatccaacaaaggtttccaagtagacattctcttagaattagtctcaacc-gaagacctatttactttaa |
6034479 |
T |
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| Q |
117 |
aggaatcgaacctataatataaagaggttgtcatc------ttgaaggtacatcactatacatcaatatttgtaaactacttatgtacaattgtattcaa |
210 |
Q |
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| T |
6034478 |
aggaatcgaacctataatataaagaggttgtcatcagcatattgaaggtacatcactatacatcaatatttgtaaactacttatgtacaattgtattcaa |
6034379 |
T |
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| Q |
211 |
agagatgtaatctcaataatattaaggacttcactatacatcaatatcgtattgtagggttttcttgttattattttgtaacttggttctattgcttttc |
310 |
Q |
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| T |
6034378 |
agagatgtaatgtcaataatattaaggacttcactatacatcaatatcgtattgtagggttttcttgttattattttgtaacttggttctattgcttttc |
6034279 |
T |
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| Q |
311 |
gaggaactccatgttcaacttgtgcatagttagcagttattaatataatctatt |
364 |
Q |
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| T |
6034278 |
gaggaactccatgttcaacttgtgcatagttagcagttattaatataatctatt |
6034225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 5219258 - 5219217
Alignment:
| Q |
47 |
tatccaacaaaggtttccaagtagacattctcttagaattag |
88 |
Q |
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| T |
5219258 |
tatccaacaaaggctgccaagtagacaatctcttagaattag |
5219217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 16573960 - 16573919
Alignment:
| Q |
47 |
tatccaacaaaggtttccaagtagacattctcttagaattag |
88 |
Q |
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| T |
16573960 |
tatccaacaaaggctaccaagtagacaatctcttagaattag |
16573919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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