View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_high_2 (Length: 702)
Name: NF14492_high_2
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 684
Target Start/End: Complemental strand, 11571485 - 11570804
Alignment:
| Q |
1 |
aaatattagaagttaagataaacaagaagtaaagggggtgaaactaaggctctaagattgcggtttattgatcatgtctatcatagcagtccagcatttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11571485 |
aaatattagaagttaagataaacaagaagtaaagggtgtgcaactaaggctctaagattgcggtttattgatcatgtccatcatagcagtccagcatttg |
11571386 |
T |
|
| Q |
101 |
tctttgattgctcagccaaggttcctcatgtttcttcttcaaattactttccagttcttcttgtttccttagtgattccaaatgttgctcttgtactctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11571385 |
tctttgattgctcagccaaggttcctcatctttcttcttcaaattactttccatttcttcttgcttccttagtgattccaaatgttgctcttgtactctc |
11571286 |
T |
|
| Q |
201 |
tttttcaaagcttcttgctttctgataagttattcttgaataagactctatctcttctactcttctcaaagttcagctaattgcttcagtggattctcag |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11571285 |
ttttccaaagcttcttgctttctgataagttattcttgactcagactctatctcttctactcttctcaaagttcagctaattgcttcagtggattctcag |
11571186 |
T |
|
| Q |
301 |
aaatcatcttctgatcgagaaaatcttcttacagcttttcaatcagcttcacttcttcaggatcttcaagatcgagcctcttgattacaaccttctatgg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11571185 |
aaatcatcttctgatcgagaaaatcttcttacagcttttcaatcagcttcacttcttcaggatcttcaagatcgagactcttgattacaaccttctatgt |
11571086 |
T |
|
| Q |
401 |
tttaatgaacatgctagtgatccaggaagtatgaaggccagtcttgacagcaggtggattctccttggtatgatcaatgaagtgttgagagtctgaaagt |
500 |
Q |
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| T |
11571085 |
tttaatgaacatgctagtgatccaggaagtatgaaggccagtcttgacagcaggtggattctccttggtatgatcaatgaagtgttgagagtctgaaagt |
11570986 |
T |
|
| Q |
501 |
tgtttgatagatctcttgaacttgatagtctccaatgccttcttattttccgtaaggacttctaacaacttttcttcttgcatcctggttaaggtattgc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
11570985 |
tgtttgatagatctcttgaacttgatagtctccaatgccttcttattttccgtaaggacttctaacaacctt--ttcttgcatcctggttaaggtattgc |
11570888 |
T |
|
| Q |
601 |
ttattatggaagggtgacgacgatcttcacctaaaaagacgtaattaaaatgttaaggaagtttcttaagttcaggggtattct |
684 |
Q |
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| T |
11570887 |
ttattatggaagggtgacgatgatcttcacctaaaaagacgtaattaaaatgttaaggaagtttcttaagctcaggggtattct |
11570804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 323 - 449
Target Start/End: Original strand, 24620455 - 24620581
Alignment:
| Q |
323 |
atcttcttacagcttttcaatcagcttcacttcttcaggatcttcaagatcgagcctcttgattacaaccttctatggtttaatgaacatgctagtgatc |
422 |
Q |
| |
|
|||||||| ||| || ||||||||||| |||||||| ||||| |||||||| | |||||||||||| ||||||| ||||| ||||||||| | || ||| |
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| T |
24620455 |
atcttcttgcagtttctcaatcagcttaacttcttctggatcctcaagatctaacctcttgattaccaccttctcaggtttgatgaacatgttggttatc |
24620554 |
T |
|
| Q |
423 |
caggaagtatgaaggccagtcttgaca |
449 |
Q |
| |
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||||| |||| ||| |||||||||||| |
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| T |
24620555 |
caggaggtatcaagcccagtcttgaca |
24620581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 13306090 - 13305949
Alignment:
| Q |
91 |
ccagcatttgtctttgattgctcagcc-aaggttcctcatgtttcttcttcaaattactttccagttcttcttgtttccttagtgattccaaatgttgct |
189 |
Q |
| |
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|||||||||||||||| |||||||||| ||| |||||||||| |||||||| ||| ||||| || |||||||| |||||||| || || || ||||||| |
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| T |
13306090 |
ccagcatttgtctttgcttgctcagccaaagactcctcatgttgcttcttcatatttctttctagctcttcttgcttccttagagactctaagtgttgct |
13305991 |
T |
|
| Q |
190 |
cttgtactctctttttcaaagcttcttgctttctgataagtt |
231 |
Q |
| |
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| || | | || | |||||||||||||||||||||||||| |
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|
| T |
13305990 |
cctgcatatttttctccaaagcttcttgctttctgataagtt |
13305949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 351 - 514
Target Start/End: Original strand, 15648892 - 15649055
Alignment:
| Q |
351 |
acttcttcaggatcttcaagatcgagcctcttgattacaaccttctatggtttaatgaacatgctagtgatccaggaagtatgaaggccagtcttgacag |
450 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||| || ||||||| ||| || || |||||||| ||||| ||||||||| |||| |||||||||| |
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| T |
15648892 |
acttcttcaagatcttcaagatccagtctcttgataactaccttctctggattgataaacatgcttgtgatttaggaagtatcaaggtcagtcttgacca |
15648991 |
T |
|
| Q |
451 |
caggtggattctccttggtatgatcaatgaagtgttgagagtctgaaagttgtttgatagatct |
514 |
Q |
| |
|
| | ||| | || || |||||||||||||||||| || ||||| | ||||||||||| ||||| |
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|
| T |
15648992 |
ctgcaggaatatctttagtatgatcaatgaagtgtggatagtctaacagttgtttgattgatct |
15649055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 353 - 522
Target Start/End: Original strand, 15553227 - 15553396
Alignment:
| Q |
353 |
ttcttcaggatcttcaagatcgagcctcttgattacaaccttctatggtttaatgaacatgctagtgatccaggaagtatgaaggccagtcttgacagca |
452 |
Q |
| |
|
|||||||| |||||||||||| | |||||||| || ||||||| ||| || || |||||||| |||||| ||||||||| |||| |||||||||| | |
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| T |
15553227 |
ttcttcagtatcttcaagatcctgtctcttgataactaccttctttggcttgataaacatgcttgtgatctaggaagtatcaaggtcagtcttgactact |
15553326 |
T |
|
| Q |
453 |
ggtggattctccttggtatgatcaatgaagtgttgagagtctgaaagttgtttgatagatctcttgaact |
522 |
Q |
| |
|
| || | || || |||||||||||||||||| |||||||| | | ||||||||| ||||| ||||||| |
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| T |
15553327 |
gcaagaatatctttagtatgatcaatgaagtgtggagagtctaacaattgtttgattgatcttttgaact |
15553396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 517
Target Start/End: Complemental strand, 18814641 - 18814463
Alignment:
| Q |
339 |
tcaatcagcttcacttcttcaggatcttcaagatcgagcctcttgattacaaccttctatggtttaatgaacatgctagtgatccaggaagtatgaaggc |
438 |
Q |
| |
|
||||| |||||||| |||||| |||||| |||| || ||||||||||| ||||||| ||| || || ||||| || || |||||| |||||| ||| | |
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| T |
18814641 |
tcaataagcttcacctcttcaagatctttcagatttagactcttgattactaccttctttggcttgataaacatacttgtaatccagaaagtatcaagac |
18814542 |
T |
|
| Q |
439 |
cagtcttgacagcaggtggattctccttggtatgatcaatgaagtgttgagagtctgaaagttgtttgatagatctctt |
517 |
Q |
| |
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|||| |||| | | ||| | ||||||||||||||||||| ||| |||||||||| | ||| ||||| |||||||| |
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| T |
18814541 |
cagttttgatcactgcaggaatttccttggtatgatcaatgagatgtggagagtctgataattgcttgattgatctctt |
18814463 |
T |
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