View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_high_25 (Length: 337)
Name: NF14492_high_25
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 316
Target Start/End: Complemental strand, 49977047 - 49976760
Alignment:
| Q |
28 |
cattgcattgcatttatttatttcttatcactttaccaactacccctttcannnnnnnnccttctcctagtatgatatatgcttacaaacaagtactcaa |
127 |
Q |
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| T |
49977047 |
cattgcattgcatttatttatttcttatcactttaccaactacccctttcattttttttccttctcctagtatgatatatgcttaaaaaaaagtacacaa |
49976948 |
T |
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| Q |
128 |
agctaggtctaagagaagaaaaagagtaatgtatcatggtgnnnnnnnccatgacctagtctttcattttattttcatggtgcgctattgtgaaaataat |
227 |
Q |
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| T |
49976947 |
agctaggtctaagagaagaaaaagagtaatgtatcatggtgaaaaaaaccatgacctagtctttcattttattttcatggtgcgctattgtgaaaataat |
49976848 |
T |
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| Q |
228 |
aaattnnnnnnngaaattatgttgttttggttatgtgatcactaatgaagaagaagatttaattaattaaataaattactgaattacca |
316 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49976847 |
aaattaaaaaaa-aaattatgttgttttggttatgtgattactaatgaagaagaagatttaattaattaaataaattactgaattacca |
49976760 |
T |
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