View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_high_26 (Length: 325)

Name: NF14492_high_26
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_high_26
NF14492_high_26
[»] chr1 (1 HSPs)
chr1 (1-325)||(5508859-5509181)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 5508859 - 5509181
Alignment:
Q  1 tccattgagttttattgcaaaataatattatcaaccagcaaataacattcttcaaccaactctagctcttattaaaacaacacgcacctccaacatcacc 100  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5508859 tccaatgagttttatcgcaaaataatattatcaaccaacaaataacactcttcaaccaactctagctcttattaaaacaacacgcacctccaacatcact 5508958  T
Q  101 gagcatccatcatttttattacttgccaaactatatagtctactggattgatcctttaataccacacattcactcaaatatcatgtcaaaacaatgaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5508959 gagcatccatcatttttattacttgccaaactatatagtctactggattgatcctttaataccacacattcactcaaatatcatgtcaaaacagtgaatc 5509058  T
Q  201 tcttccataaccaatagtaatctttatcattgttttagcttgatcaatctggaactaatcccatacatggactaccaactaccccacaatatatcaatcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5509059 tcttccataaccaatagtaatctttatcattgttttagcttgatcaatctgtaactaatcccatacatgaactaccaactaccccacaatatatcaatcc 5509158  T
Q  301 atgtactttttagccaaaatgttaa 325  Q
    |  || |||||||||||||||||||    
T  5509159 a--tattttttagccaaaatgttaa 5509181  T

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