View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_high_29 (Length: 315)
Name: NF14492_high_29
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 40 - 267
Target Start/End: Complemental strand, 39336416 - 39336187
Alignment:
| Q |
40 |
atggaactgaacatagggagtcgatacaaactaaaatagagtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattct |
139 |
Q |
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| T |
39336416 |
atggaaccgaacatagggagtcgatacaaactaaaatagagtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattct |
39336317 |
T |
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| Q |
140 |
tgcaatgagac--tcaaatccacgctggcatcaatacgtctaccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagag |
237 |
Q |
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|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39336316 |
tgcaatgacacactcaaatccacgctggcatcaatatgtctaccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagag |
39336217 |
T |
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| Q |
238 |
aaacataatgaagtttaccaaatctaccat |
267 |
Q |
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| T |
39336216 |
aaacataatgaagtttaccaaatctaccat |
39336187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 7295429 - 7295508
Alignment:
| Q |
90 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatc |
169 |
Q |
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| T |
7295429 |
accaatgcagcaagatcagcaccattaaagtttttacaagctttcattcttgcaatgtcgctcaaatccacactggcatc |
7295508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 7304663 - 7304746
Alignment:
| Q |
90 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatcaata |
173 |
Q |
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| T |
7304663 |
accaatgcagcaagatcggcaccactatagttttcacaggctttcgatcttccaatggcgctcaaatccacactggcatcaata |
7304746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 290
Target Start/End: Complemental strand, 791004 - 790800
Alignment:
| Q |
80 |
gtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatcaatacgtcta |
179 |
Q |
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|||||||||||||||| |||||||||| || || |||| ||||||||| | ||||||||| ||||| |||||||| || || | ||||||| || || |
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| T |
791004 |
gtagaaacataccaattcagcaagatcagcaccgctaaggttttcacatgcatccattcttccaatggcgctcaaatctacactagaatcaatatgttta |
790905 |
T |
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| Q |
180 |
ccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagagaaacataatgaagtttaccaaatctaccatgtcgtaagagag |
279 |
Q |
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| T |
790904 |
ttccttgcaagagctttcaatatcaaaacacgg------tcatctgggctcgggagaggaacatagagcagtttaccaaacctcccaggccgtaagagag |
790811 |
T |
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| Q |
280 |
cagggtccatc |
290 |
Q |
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| T |
790810 |
cggggtccatc |
790800 |
T |
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