View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14492_high_3 (Length: 660)
Name: NF14492_high_3
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 19934474 - 19934856
Alignment:
| Q |
19 |
attatggctatcagttcttattcttcacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19934474 |
attatggctatcagttcttattcttcacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagat |
19934573 |
T |
|
| Q |
119 |
attactttacccattagatcgttccacctcaaccgttcaaaacgttatggcattgagacacaggatatcaatcgatttgttcacgctattgcacaacgtg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19934574 |
attactttacccattagatcgttccacctcaaccgttcaaaacgttatggcattgagacacagaatatcaatcgatttgttcacgctattgcacaacgtg |
19934673 |
T |
|
| Q |
219 |
gaatcgagaacctcaatcttgaactgtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19934674 |
gaatcgagaacctcaatcttgaactgtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattac |
19934773 |
T |
|
| Q |
319 |
agtgaaagacctttctcaactggttgtggattttcctctcctcaaagaacttcacttttttggtgtacttttggaacgtgctgaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19934774 |
agtgaaagacctttctcaactggttgtggattttcctctcct--aaaaacttcacttgtttggtgtacttttggaacgtgctgaa |
19934856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 19965613 - 19965995
Alignment:
| Q |
19 |
attatggctatcagttcttattcttcacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965613 |
attatggctatcagttcttattcttcacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagat |
19965712 |
T |
|
| Q |
119 |
attactttacccattagatcgttccacctcaaccgttcaaaacgttatggcattgagacacaggatatcaatcgatttgttcacgctattgcacaacgtg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965713 |
attactttacccattagatcgttccacctcaaccgttcaaaacgttatggcattgagacacagaatatcaatcgatttgttcacgctattgcacaacgtg |
19965812 |
T |
|
| Q |
219 |
gaatcgagaacctcaatcttgaactgtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965813 |
gaatcgagaacctcaatcttgaactgtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattac |
19965912 |
T |
|
| Q |
319 |
agtgaaagacctttctcaactggttgtggattttcctctcctcaaagaacttcacttttttggtgtacttttggaacgtgctgaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19965913 |
agtgaaagacctttctcaactggttgtggattttcctctcct--aaaaacttcacttgtttggtgtacttttggaacgtgctgaa |
19965995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 397 - 650
Target Start/End: Original strand, 19934904 - 19935156
Alignment:
| Q |
397 |
tgctgaacgtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
496 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19934904 |
tgctgaaagtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
19935003 |
T |
|
| Q |
497 |
actaaatcgtcccattctttggcgctttttctcacattactttgcagggcaaagtctcagcttctgcgtgcagaattggtaagaatattatagttgattt |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
19935004 |
actaaatcgtcccattctttggcgctttttctcgcattactttgcagggcaaagtctcaacttctgcgtgcagaattggtaagaatattatggttaattt |
19935103 |
T |
|
| Q |
597 |
annnnnnnaataaactttgttaattatagttttgcccttcgattatgatctgtg |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19935104 |
-tttttttaataaactttgttaattatagttttgcccttcgattatgatctgtg |
19935156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 397 - 650
Target Start/End: Original strand, 19966043 - 19966295
Alignment:
| Q |
397 |
tgctgaacgtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
496 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19966043 |
tgctgaaagtttaattgtcagaaacaaggaatggcttgtttcactgaattttgtacgacaaaagtttccaagcttaccgaagttaatcacagcaaacatt |
19966142 |
T |
|
| Q |
497 |
actaaatcgtcccattctttggcgctttttctcacattactttgcagggcaaagtctcagcttctgcgtgcagaattggtaagaatattatagttgattt |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
19966143 |
actaaatcgtcccattctttggcgctttttctcgcattactttgcagggcaaagtctcaacttctgcgtgcagaattggtaagaatattatggttaattt |
19966242 |
T |
|
| Q |
597 |
annnnnnnaataaactttgttaattatagttttgcccttcgattatgatctgtg |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19966243 |
-tttttttaataaactttgttaattatagttttgcccttcgattatgatctgtg |
19966295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 19926560 - 19926745
Alignment:
| Q |
19 |
attatggctatcagttcttattcttcacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtttttctcttacgagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
19926560 |
attatggctatcagttcttattcttcacttcgaagacgaaacctttcaaaacatggaatcctttagccattttatgtcctctgtctttcttttacgagac |
19926659 |
T |
|
| Q |
119 |
attactttacccattagatcgttccacctcaaccgttcaaaacgttatggcattgagacacaggatatcaatcgatttgttcacgc |
204 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| |||||||| | |||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
19926660 |
attactttacccctccgatcattccacctcaaatgttcaaaagcctctggcatccagccacaagatatcaatcgatttgttcacgc |
19926745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 197 - 364
Target Start/End: Original strand, 19928420 - 19928587
Alignment:
| Q |
197 |
gttcacgctattgcacaacgtggaatcgagaacctcaatcttgaactgtccggcagtataacattacctcgtagcgttttcagctgtaggaccctcgttg |
296 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
19928420 |
gttcacgctgctgtacaacgtggaatcgaggacctcaatcttgaaatgcctggcagggtaacattacctcgtagcattttcagttgtaggacccttgttt |
19928519 |
T |
|
| Q |
297 |
ttcttcatttgcaatggattacagtgaaagacctttctcaactggttgtggattttcctctcctcaaa |
364 |
Q |
| |
|
|||||||||| || || ||| |||||| ||| ||||||| |||||| ||||| ||||| |||||| |
|
|
| T |
19928520 |
ctcttcatttgaaagggcttaaagtgaatgacatttctcacggggttgtagatttccctctgctcaaa |
19928587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 47606346 - 47606269
Alignment:
| Q |
259 |
attacctcgtagcgttttcagctgtaggaccctcgttgttcttcatttgcaatggattacagtgaaagacctttctca |
336 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||| |||||||||||||| || || | | |||||| ||||||||||| |
|
|
| T |
47606346 |
attacctcgtagcatttttagttgtagaacccttattgttcttcatttgaaagggctaaaagtgaatgacctttctca |
47606269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 4288847 - 4288802
Alignment:
| Q |
319 |
agtgaaagacctttctcaactggttgtggattttcctctcctcaaa |
364 |
Q |
| |
|
|||||| || ||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4288847 |
agtgaatgatctttctcaagtggttgtgaattttcctctcctcaaa |
4288802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University