View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_high_31 (Length: 310)
Name: NF14492_high_31
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 58 - 295
Target Start/End: Original strand, 50168981 - 50169215
Alignment:
| Q |
58 |
ttttcataacaaaggtgggagctttgctatcaaattcaacccttttactatataattcattgtaaagttccaaaaatcttaatctccacattcgaagatt |
157 |
Q |
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| T |
50168981 |
ttttcataacaaaggtgggagctttgctatcaaattcaacccttttactatataattcattgtaaagttccaaaaatgttaatctccacattcgaagatt |
50169080 |
T |
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| Q |
158 |
gttaatacccgttgcacacaattctcctcaattccacagctccaattcaaaatcataaactccataaatcttcaacaggaaaataggttgattaaataaa |
257 |
Q |
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| T |
50169081 |
gttaatactcgttgcacacaattttcctcaattccacagctccaattcaaaatcataaactccataaatcttcaacaggaagataggttgattaaataaa |
50169180 |
T |
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| Q |
258 |
aagttaataatatttgcttccactagtgctagcattga |
295 |
Q |
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| T |
50169181 |
aagt---taatatttgcttccactagtgctagcattga |
50169215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 10160120 - 10160194
Alignment:
| Q |
58 |
ttttcataacaaaggtgggagctttgctatcaaattcaacccttttactatataattcattgtaaagttccaaaa |
132 |
Q |
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|||||| |||||||||| ||||||||||||||||||||| | ||||||||| | ||||||| ||| | |||||| |
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| T |
10160120 |
ttttcagaacaaaggtgaaagctttgctatcaaattcaactcctttactatacatttcattgaaaactaccaaaa |
10160194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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