View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_high_4 (Length: 654)

Name: NF14492_high_4
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_high_4
NF14492_high_4
[»] chr5 (11 HSPs)
chr5 (44-638)||(42147725-42148294)
chr5 (26-144)||(11607539-11607657)
chr5 (26-144)||(33858543-33858661)
chr5 (26-135)||(19357267-19357375)
chr5 (26-142)||(1826309-1826425)
chr5 (57-142)||(39570079-39570164)
chr5 (26-142)||(33271664-33271780)
chr5 (76-135)||(9827845-9827904)
chr5 (26-111)||(10292954-10293038)
chr5 (26-131)||(29990023-29990129)
chr5 (26-131)||(38010618-38010724)
[»] chr7 (8 HSPs)
chr7 (20-144)||(35341584-35341708)
chr7 (26-128)||(48072451-48072553)
chr7 (26-128)||(32694575-32694677)
chr7 (26-135)||(48250211-48250322)
chr7 (147-230)||(30616772-30616857)
chr7 (31-69)||(31306878-31306916)
chr7 (37-94)||(40856943-40857000)
chr7 (87-142)||(40856481-40856536)
[»] chr3 (12 HSPs)
chr3 (20-144)||(44380302-44380426)
chr3 (31-135)||(35094605-35094709)
chr3 (26-135)||(33509737-33509846)
chr3 (26-135)||(37742782-37742891)
chr3 (46-142)||(47426400-47426496)
chr3 (31-142)||(17466323-17466434)
chr3 (26-131)||(31187074-31187180)
chr3 (26-131)||(47186236-47186342)
chr3 (75-131)||(42664734-42664791)
chr3 (79-131)||(50934561-50934614)
chr3 (80-123)||(34029349-34029393)
chr3 (58-142)||(39498707-39498790)
[»] chr2 (9 HSPs)
chr2 (31-135)||(23863813-23863917)
chr2 (26-135)||(34392086-34392195)
chr2 (20-133)||(4779644-4779757)
chr2 (26-135)||(25275627-25275735)
chr2 (31-132)||(4775694-4775796)
chr2 (26-135)||(41095791-41095900)
chr2 (88-136)||(21604015-21604063)
chr2 (32-132)||(7381752-7381851)
chr2 (26-70)||(21606161-21606205)
[»] chr4 (14 HSPs)
chr4 (33-135)||(35869583-35869685)
chr4 (35-142)||(21260844-21260951)
chr4 (41-142)||(33249394-33249495)
chr4 (31-142)||(22343387-22343498)
chr4 (36-135)||(51811971-51812070)
chr4 (26-135)||(12473761-12473870)
chr4 (26-135)||(12528170-12528279)
chr4 (32-108)||(55590555-55590631)
chr4 (20-100)||(1796642-1796722)
chr4 (73-123)||(33174584-33174632)
chr4 (75-131)||(52012839-52012896)
chr4 (98-135)||(52910126-52910163)
chr4 (32-78)||(35781023-35781069)
chr4 (80-131)||(9799421-9799473)
[»] chr6 (4 HSPs)
chr6 (26-135)||(5403881-5403990)
chr6 (26-128)||(1211849-1211951)
chr6 (147-224)||(8982621-8982702)
chr6 (36-137)||(32644852-32644952)
[»] scaffold0519 (1 HSPs)
scaffold0519 (31-135)||(11251-11355)
[»] chr8 (7 HSPs)
chr8 (31-135)||(11254038-11254142)
chr8 (26-132)||(24337835-24337941)
chr8 (26-142)||(41179568-41179684)
chr8 (59-142)||(4708345-4708428)
chr8 (31-135)||(18168442-18168547)
chr8 (31-135)||(18631999-18632104)
chr8 (76-131)||(1514864-1514920)
[»] chr1 (8 HSPs)
chr1 (44-144)||(8462176-8462276)
chr1 (31-135)||(32676193-32676297)
chr1 (31-123)||(29119334-29119426)
chr1 (26-135)||(2569094-2569202)
chr1 (20-120)||(46435464-46435564)
chr1 (26-131)||(8809644-8809750)
chr1 (100-134)||(3688917-3688951)
chr1 (99-135)||(25161366-25161402)
[»] scaffold0032 (1 HSPs)
scaffold0032 (31-131)||(34255-34353)
[»] scaffold0229 (1 HSPs)
scaffold0229 (26-128)||(13010-13113)
[»] scaffold0263 (1 HSPs)
scaffold0263 (84-135)||(23162-23213)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 44 - 638
Target Start/End: Complemental strand, 42148294 - 42147725
Alignment:
Q  44 tatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcacta 143  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||       
T  42148294 tatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggctca--- 42148198  T
Q  144 tttatttatgtctattttatgaaacaacttgtatatataagttacaattttttggctcccc-acatttttagttaagatccgccaccgtcaattact--- 239  Q
     |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  |||       
T  42148197 -ttatttctgtctattttatgaaacagcttgtatatataagttacaattttttggctcccccacatttttagttaagatccgccactgtcaaacactaat 42148099  T
Q  240 -----tgatattatttaccgtaaaataagttgttcatgttcttccggacaannnnnnnnnnnnnnnncatgttggatgagtgatatctagaaatctaact 334  Q
         ||||||||||||| ||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||    
T  42148098 atagttgatattatttactgtaaaataagttgttcatgttcttccggacaaaaaaaattgtt-----catgttggatgagtgatatctagaaatctaact 42148004  T
Q  335 actcaagttttgttaaaaaccgttcaaccatctttcgataacacatttttgtcatgattcttcaggtacatgccacatagtacttttatctgcaaaccat 434  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                     ||||||||||||||||||||||||||||    
T  42148003 actcaagttttgttaaaaaccgttcaaccatcttt-gataacacatttttg---------------------ccacatagtacttttatctgcaaaccat 42147926  T
Q  435 atagctttctttgactttcttaggttagattgcatgagcacacaaatattattttgtacnnnnnnncaggaataattttttgtacttataaataaaagtc 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  42147925 atagctttctttgactttcttaggttagattgcatgagcacacaaatattattttgtactttttttcaggaataattttttgtacttataaataaaagtc 42147826  T
Q  535 cgtgacatagatgcagtttcggacttgtggatatcatttaacatgtttcgatggaatgcacttagaatcatccttgaagattcaatacacatgtgtcaac 634  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42147825 cgtgacatagatgcagtttcggact--tggatatca-ttaacatgtttcgatggaatgcacttagaatcatccttgaagattcaatacacatgtgtcaac 42147729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 11607539 - 11607657
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11607539 acttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 11607638  T
Q  126 ttggtaggtgactcactat 144  Q
    |||||||||| | ||||||    
T  11607639 ttggtaggtggcacactat 11607657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 33858543 - 33858661
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  33858543 acttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaaca 33858642  T
Q  126 ttggtaggtgactcactat 144  Q
    |||||||||| | ||||||    
T  33858643 ttggtaggtggcacactat 33858661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 19357267 - 19357375
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||||||||||||||||||||||||  |||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  19357267 acttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaagtaata 19357365  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  19357366 ttggtaggtg 19357375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 1826425 - 1826309
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||| ||||||||||||||||||||| |||||| ||||||| | |||| |||  |||||||||| ||||||||||||| ||| || |||||||||    
T  1826425 acttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctacaaagtaata 1826326  T
Q  126 ttggtaggtgactcact 142  Q
    |||||||||||| ||||    
T  1826325 ttggtaggtgacacact 1826309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 39570079 - 39570164
Alignment:
Q  57 ccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 142  Q
    ||||||||||| ||  | |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  39570079 ccaattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacact 39570164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 33271780 - 33271664
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    ||||||||||||||||| ||||||  |||| ||||||||||||||| ||||||  || ||||||||||| ||||||||||||| ||||||| |||||| |    
T  33271780 acttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatcaagtaaca 33271681  T
Q  126 ttggtaggtgactcact 142  Q
    ||| ||| |||| ||||    
T  33271680 ttgatagatgacacact 33271664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 9827904 - 9827845
Alignment:
Q  76 tggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 135  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||    
T  9827904 tggtacacccttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtg 9827845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 10293038 - 10292954
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaaca 111  Q
    |||| |||||||||||| |||||| ||||| |||||||   ||||| |||||| |||||||||||||||  |||||||||||||||    
T  10293038 acttgtgtaccataatgttatataacattggccaattaaggtgtgccacgtggcacaccctttaaaaaa-aatatcaaataaaaca 10292954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 29990129 - 29990023
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 124  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||  | |||| |||| ||||||||||  ||||||||||||||||||||||||||||     
T  29990129 acttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaac 29990030  T
Q  125 attggta 131  Q
    |||||||    
T  29990029 attggta 29990023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 38010618 - 38010724
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 124  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||| | |||| |||| ||||||||||  |||||||||||||  |||||||||||||     
T  38010618 acttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaac 38010717  T
Q  125 attggta 131  Q
    |||||||    
T  38010718 attggta 38010724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 6e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 35341708 - 35341584
Alignment:
Q  20 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 119  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  35341708 gataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaa 35341609  T
Q  120 gtaatattggtaggtgactcactat 144  Q
    |||| ||||||||||| | ||||||    
T  35341608 gtaacattggtaggtggcacactat 35341584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 48072553 - 48072451
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||| |||||| ||||||||||||||| || ||||||||||| ||||||||| ||| |    
T  48072553 acttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataaaataaca 48072454  T
Q  126 ttg 128  Q
    |||    
T  48072453 ttg 48072451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 32694575 - 32694677
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| ||||| |||||| |||||| ||||| | ||||||||||||  |||||| ||||||||||||||| |||||||||||||  ||||||||||||| |    
T  32694575 acttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataaagtaaca 32694674  T
Q  126 ttg 128  Q
    |||    
T  32694675 ttg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 48250322 - 48250211
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtg--gtacaccctttaaaaaagtatatcaaataaaacatttataaagtaa 123  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||  || ||  | | |||||||||||||  |||||||||||| ||| ||||||||||    
T  48250322 acttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctataaagtaa 48250223  T
Q  124 tattggtaggtg 135  Q
     |||||||||||    
T  48250222 cattggtaggtg 48250211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 30616857 - 30616772
Alignment:
Q  147 atttatgtctattttatgaaacaacttgtatatataagttacaattttttggctcccc--acatttttagttaagatccgccaccg 230  Q
    |||| |||||||||||||||||||||||||||||  ||||| | || |||||| ||||  ||||||||| | ||||||||||||||    
T  30616857 atttgtgtctattttatgaaacaacttgtatataggagttaaatttatttggcacccctaacatttttaatcaagatccgccaccg 30616772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 31306878 - 31306916
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgt 69  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31306878 tgtaccataatgatatatatcattgtccaattagaatgt 31306916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 40857000 - 40856943
Alignment:
Q  37 ataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaa 94  Q
    |||||| |||||||||||||||||||||||||||  | |||| |||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacaccctttaaaaaa 40856943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 40856536 - 40856481
Alignment:
Q  87 ttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 142  Q
    |||||||| || |||||||||||||| |||||| ||| ||||||||||||| ||||    
T  40856536 ttaaaaaaatacatcaaataaaacatctataaaataacattggtaggtgacacact 40856481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 44380426 - 44380302
Alignment:
Q  20 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 119  Q
    ||||| |||| |||||||||||| |||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  44380426 gataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataaa 44380327  T
Q  120 gtaatattggtaggtgactcactat 144  Q
    ||||||||| |||||||| ||||||    
T  44380326 gtaatattgataggtgacacactat 44380302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 35094709 - 35094605
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||||  ||| ||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  35094709 tgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagtaacattggt 35094610  T
Q  131 aggtg 135  Q
    |||||    
T  35094609 aggtg 35094605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 33509846 - 33509737
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| ||||| |||||| |||||||||||||| ||||||||||||| | |||| ||| ||||||||||| || |||||||||| ||| ||||||||||||    
T  33509846 acttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaagtaata 33509747  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  33509746 ttggtaggtg 33509737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 37742891 - 37742782
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||| ||||||| |||||| ||||| ||||||| ||||||| |||||| |||| |||||||||| ||||||||||||| ||||  ||| |||| |    
T  37742891 acttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggtaatgtaaca 37742792  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  37742791 ttggtaggtg 37742782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 47426496 - 47426400
Alignment:
Q  46 tatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 142  Q
    |||| ||||| ||||||||||||| | | |||| ||||||||||||||| ||||||||||||| ||| |||||||||| |||| |||||||| ||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacact 47426400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 17466434 - 17466323
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    |||||| ||||| |||||| |||||  || ||||| ||||  |||||| | ||||||||||||| |||||||| |||| |||||||||||||| |||| |    
T  17466434 tgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataaagtaacattgat 17466335  T
Q  131 aggtgactcact 142  Q
    ||||||| ||||    
T  17466334 aggtgacacact 17466323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 31187074 - 31187180
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 124  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||  | |||| |||| ||||||||||  ||||||||||||||||||||||||||||     
T  31187074 acttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaac 31187173  T
Q  125 attggta 131  Q
    |||||||    
T  31187174 attggta 31187180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 47186342 - 47186236
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 124  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||| | |||| |||| ||||||||||  |||||||||||||  |||||||||||||     
T  47186342 acttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaac 47186243  T
Q  125 attggta 131  Q
    |||||||    
T  47186242 attggta 47186236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 42664791 - 42664734
Alignment:
Q  75 gtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 131  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||| ||| |||||||    
T  42664791 gtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggta 42664734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 50934614 - 50934561
Alignment:
Q  79 tacaccctttaaa-aaagtatatcaaataaaacatttataaagtaatattggta 131  Q
    ||||||||||||| ||| ||||||||||||  |||||||||||||| |||||||    
T  50934614 tacaccctttaaataaaatatatcaaataatgcatttataaagtaacattggta 50934561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 34029349 - 34029393
Alignment:
Q  80 acaccctttaaaaaag-tatatcaaataaaacatttataaagtaa 123  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||    
T  34029349 acacactttaaaaaacatatatcaaataaaacatttataaagtaa 34029393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 39498707 - 39498790
Alignment:
Q  58 caattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 142  Q
    |||||||||||||  |||||| ||| ||||| ||||| ||||| |||||||| ||||||||| ||| || | |||||||| ||||    
T  39498707 caattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacacact 39498790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 23863813 - 23863917
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||| |||||||||||||| ||||||    
T  23863813 tgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggt 23863912  T
Q  131 aggtg 135  Q
    |||||    
T  23863913 aggtg 23863917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 34392086 - 34392195
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||| | |||| ||||||||||||||| ||||||||||||| |||||||||||||| |    
T  34392086 acttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaagtaaga 34392185  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  34392186 ttggtaggtg 34392195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 4779757 - 4779644
Alignment:
Q  20 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 119  Q
    ||||| |||| |||| ||||||| |||||| ||||||||||||||||||||  |||||  ||| ||||||||||| |||||||||||||  |||||||||    
T  4779757 gataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttataaa 4779658  T
Q  120 gtaatattggtagg 133  Q
    |||| |||| ||||    
T  4779657 gtaacattgttagg 4779644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 25275627 - 25275735
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||   |||||| ||| |||||||||||||||||||||||||  ||||| ||||||| |    
T  25275627 acttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtattta-aaagtaaca 25275725  T
Q  126 ttggtaggtg 135  Q
    ||| ||||||    
T  25275726 ttgataggtg 25275735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 4775796 - 4775694
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaac-atttataaagtaatattgg 129  Q
    |||||||||||| |||||| ||||||||||||| | ||||| | |||| ||| ||||||||||| ||||| ||||||||| ||| ||||||||| |||||    
T  4775796 tgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaataaagtaagattgg 4775697  T
Q  130 tag 132  Q
    |||    
T  4775696 tag 4775694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 41095791 - 41095900
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    ||||| ||||||||||| |||||| ||||| ||| ||||  ||||| | |||| | ||| ||||||||| | ||||||||||| |||||||||||||| |    
T  41095791 acttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataaagtaaca 41095890  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  41095891 ttggtaggtg 41095900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 21604063 - 21604015
Alignment:
Q  88 taaaaaagtatatcaaataaaacatttataaagtaatattggtaggtga 136  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21604063 taaaaaagtatatcaaataaaacatttataaagtaacattggtaggtga 21604015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 7381851 - 7381752
Alignment:
Q  32 gtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggta 131  Q
    |||| |||||| ||||||  |||| ||||||| ||||||  || ||  ||| ||||||||||| |||||||||||||  ||||||||||||| |||||||    
T  7381851 gtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataaagtaacattggta 7381753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 21606205 - 21606161
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtg 70  Q
    |||| |||| ||||||| |||||| ||||||||||||||||||||    
T  21606205 acttctgtatcataatggtatataccattgtccaattagaatgtg 21606161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 35869583 - 35869685
Alignment:
Q  33 taccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtag 132  Q
    |||||||||| |||||| |||||| |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  35869583 taccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaacattggtag 35869682  T
Q  133 gtg 135  Q
    |||    
T  35869683 gtg 35869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 21260951 - 21260844
Alignment:
Q  35 ccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggt 134  Q
    |||||||| |||||| ||||  ||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  21260951 ccataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggt 21260852  T
Q  135 gactcact 142  Q
    ||| ||||    
T  21260851 gacacact 21260844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 33249394 - 33249495
Alignment:
Q  41 tgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactca 140  Q
    |||||||||||||||  |||||||| ||||| | |||| ||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||| ||    
T  33249394 tgatatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacaca 33249493  T
Q  141 ct 142  Q
    ||    
T  33249494 ct 33249495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 22343498 - 22343387
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    |||||||||||| ||||||||||||| |||||||||||||  | |||| ||| ||||||||| | ||||||||||||| |||||||||||||| |||| |    
T  22343498 tgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataaagtaacattgat 22343399  T
Q  131 aggtgactcact 142  Q
    || |||| ||||    
T  22343398 agatgacacact 22343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 51812070 - 51811971
Alignment:
Q  36 cataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 135  Q
    ||||||| |||||| |||| |||||||||||||||  || ||| ||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||    
T  51812070 cataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataaagtaacattggtaggtg 51811971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 12473870 - 12473761
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| |||||  |||||||||||||  | |||  ||||||||||||||| ||||||||||||| ||| |||||||||| |    
T  12473870 acttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaaca 12473771  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  12473770 ttggtaggtg 12473761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 12528279 - 12528170
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| |||||  |||||||||||||  | |||  ||||||||||||||| ||||||||||||| ||| |||||||||| |    
T  12528279 acttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaaca 12528180  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  12528179 ttggtaggtg 12528170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 55590631 - 55590555
Alignment:
Q  32 gtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaa 108  Q
    ||||||||||| |||||  ||||| ||||||||||||||  |||||| ||| |||||||||||||||||||||||||    
T  55590631 gtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaa 55590555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 1796722 - 1796642
Alignment:
Q  20 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatat 100  Q
    ||||| |||| |||||||||||| |||||| ||||||||||||| | ||||| |||||  ||| ||||||||||| |||||    
T  1796722 gataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatcctttaaaaaaatatat 1796642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 33174632 - 33174584
Alignment:
Q  73 acgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaa 123  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  33174632 acgtggcacaccctttaaaaa--tatatcaaataaaacatttataaagtaa 33174584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 52012896 - 52012839
Alignment:
Q  75 gtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 131  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||||||| |||||||    
T  52012896 gtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggta 52012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 52910126 - 52910163
Alignment:
Q  98 tatcaaataaaacatttataaagtaatattggtaggtg 135  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtg 52910163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 35781069 - 35781023
Alignment:
Q  32 gtaccataatgatatatatcattgtccaattagaatgtgcaacgtgg 78  Q
    ||||||||||| |||||| ||||| ||||||||||||||| ||||||    
T  35781069 gtaccataatggtatataccattgcccaattagaatgtgccacgtgg 35781023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 9799421 - 9799473
Alignment:
Q  80 acaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 131  Q
    |||| ||||||||||  ||||| |||||||||||||||||||||| |||||||    
T  9799421 acacactttaaaaaacatatattaaataaaacatttataaagtaacattggta 9799473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 5403881 - 5403990
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||  | ||| ||| |||||||||||| ||||||||||||||||| |||||||||| |    
T  5403881 acttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataaagtaaca 5403980  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  5403981 ttggtaggtg 5403990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 1211849 - 1211951
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| ||||| || |||||||||||| |||||| ||||||||||||||| ||||||||||||| |||  ||||||||| |    
T  1211849 acttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataaagtaaca 1211948  T
Q  126 ttg 128  Q
    |||    
T  1211949 ttg 1211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 8982702 - 8982621
Alignment:
Q  147 atttatgtctattttatgaaacaacttgtata--tataagttacaattttttggctccc--cacatttttagttaagatccg 224  Q
    |||| |||||||||||||||||||||||||||  |||||||||| ||| ||||||||||  |||||||||||| ||||||||    
T  8982702 atttttgtctattttatgaaacaacttgtatatatataagttaccattatttggctcccctcacatttttagtcaagatccg 8982621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 32644852 - 32644952
Alignment:
Q  36 cataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 135  Q
    ||||||| |||||| |||||| |||||||| |||   | |||| ||||||||||||||| |||| ||||||||  |||| |||||||| ||| |||||||    
T  32644852 cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtattt-taaagtaacatttgtaggtg 32644950  T
Q  136 ac 137  Q
    ||    
T  32644951 ac 32644952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 11355 - 11251
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    |||||||||||| |||||| |||||  || ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11355 tgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaagtaacattggt 11256  T
Q  131 aggtg 135  Q
    |||||    
T  11255 aggtg 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 11254038 - 11254142
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    |||||||||||| |||||| |||||  || ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11254038 tgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaagtaacattggt 11254137  T
Q  131 aggtg 135  Q
    |||||    
T  11254138 aggtg 11254142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 24337835 - 24337941
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||| ||| |||||||||| |    
T  24337835 acttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctataaagtaaca 24337934  T
Q  126 ttggtag 132  Q
    |||||||    
T  24337935 ttggtag 24337941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 41179568 - 41179684
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||| | |||| ||| || |||||||| ||||| |||||||||||||||||||||| |    
T  41179568 acttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaaca 41179667  T
Q  126 ttggtaggtgactcact 142  Q
    | |||||||||| ||||    
T  41179668 tcggtaggtgacacact 41179684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 4708345 - 4708428
Alignment:
Q  59 aattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 142  Q
    ||||||||||||| |||||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  4708345 aattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacact 4708428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 18168547 - 18168442
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattgg 129  Q
    |||||||||||| ||||||| |||  | ||||||| ||||  |||||| ||| |||||||||||  |||||||||||||  ||||||||||||| |||||    
T  18168547 tgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattgg 18168448  T
Q  130 taggtg 135  Q
    ||||||    
T  18168447 taggtg 18168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 18632104 - 18631999
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattgg 129  Q
    |||||||||||| ||||||| |||  | ||||||| ||||  |||||| ||| |||||||||||  |||||||||||||  ||||||||||||| |||||    
T  18632104 tgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattgg 18632005  T
Q  130 taggtg 135  Q
    ||||||    
T  18632004 taggtg 18631999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 1514920 - 1514864
Alignment:
Q  76 tggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 131  Q
    ||||||||  |||||||||  |||||||||||||||||||||||||||| |||||||    
T  1514920 tggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggta 1514864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 8462276 - 8462176
Alignment:
Q  44 tatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcacta 143  Q
    |||||| ||||||||||||| ||||||  |||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||||||| | |||||    
T  8462276 tatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacacta 8462177  T
Q  144 t 144  Q
    |    
T  8462176 t 8462176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 32676297 - 32676193
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    ||||| |||||| |||||| ||||||||||||||| ||||| | |||| |||  |||||||||| ||||||||||||| |||||||||||||| ||||||    
T  32676297 tgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagtaacattggt 32676198  T
Q  131 aggtg 135  Q
    |||||    
T  32676197 aggtg 32676193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 29119334 - 29119426
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaa 123  Q
    |||||||||| | ||||||  |||| ||||||||||||||| | |||| ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  29119334 tgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaa 29119426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 2569202 - 2569094
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 125  Q
    |||| |||| ||||||||||||||  |||| | ||||||||||||| || ||| ||||||||||||||| ||||||||||||| ||||  ||| |||| |    
T  2569202 acttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaatgtaaca 2569104  T
Q  126 ttggtaggtg 135  Q
    ||||||||||    
T  2569103 ttggtaggtg 2569094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 46435464 - 46435564
Alignment:
Q  20 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 119  Q
    |||| ||||| |||||||||||| |||||| ||||| ||||||||||||||  | |||  ||||||||||||||  ||||||||||||| ||| ||||||    
T  46435464 gataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctataaa 46435563  T
Q  120 g 120  Q
    |    
T  46435564 g 46435564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 8809644 - 8809750
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 124  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||  | |||| |||| ||||||||||  ||||||||||||||||||||||||||||     
T  8809644 acttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaac 8809743  T
Q  125 attggta 131  Q
    |||||||    
T  8809744 attggta 8809750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 3688917 - 3688951
Alignment:
Q  100 tcaaataaaacatttataaagtaatattggtaggt 134  Q
    |||||||||||||||||||||||| ||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggt 3688951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 25161402 - 25161366
Alignment:
Q  99 atcaaataaaacatttataaagtaatattggtaggtg 135  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtg 25161366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 34353 - 34255
Alignment:
Q  31 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 130  Q
    |||||||||| | |||||| |||| |||||||||||||||  |||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  34353 tgtaccataagg-tatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataaagtaatattggt 34256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 13010 - 13113
Alignment:
Q  26 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtac-accctttaaaaaagtatatcaaataaaacatttataaagtaat 124  Q
    |||| |||||||||||| |||||| ||||| || |||||||||||| |||||| || ||||||||||||| ||||||||||||| |||  |||||||||     
T  13010 acttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgataaagtaac 13109  T
Q  125 attg 128  Q
    ||||    
T  13110 attg 13113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 23162 - 23213
Alignment:
Q  84 cctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 135  Q
    ||||| ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  23162 ccttttaaaaaatatatcaaataaaatatttataaagtaaaattggtaggtg 23213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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