View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_high_40 (Length: 265)
Name: NF14492_high_40
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 54428673 - 54428909
Alignment:
| Q |
13 |
aatatggtattaagttgtgtttagatattgtaatgattccctcnnnnnnngatattgtaatgatggatgtataaaaagttatttttgtactaagtaaact |
112 |
Q |
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| T |
54428673 |
aatatggtattaagttgtgtttagatattgtaatgattccctcaaaaaaagatattgtaatgatggatgtataagaagttatttttgtactaagtaaact |
54428772 |
T |
|
| Q |
113 |
ctttcaactctagagtgaagtctatgaaaattccacgagtttatgtatgctatcgagtttgacagtcatggatataaagattgagtcaagnnnnnnntcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54428773 |
ctttcaactctagagtgaagtctatgaaaattccacgagtttatgtatgctatcgagtttgacagtcatggatataaagattgagtcaagaaaaaaatcc |
54428872 |
T |
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| Q |
213 |
atcatttgcaatatttatacacactgtggaaacctta |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
54428873 |
atcatttgcaatatttatacacactgtggaaacctta |
54428909 |
T |
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