View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_10 (Length: 477)
Name: NF14492_low_10
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 477
Target Start/End: Complemental strand, 3499040 - 3498575
Alignment:
| Q |
12 |
aagcatagggatgtacgtgtatgatttctctttttatatttgagatgaaggctgatgccatattattcaactgtcttagtgactggctgatgccatatta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3499040 |
aagcatagggatgtacgtgtatgatttctctttttatatttgagatgaaggctgatgccatattattcagctgtcttagtgactggctgatgccatatta |
3498941 |
T |
|
| Q |
112 |
ttcaaatctcataccatgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnn |
211 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3498940 |
ttcaaatctcatatcatgatgctggttgcgacatttatgactgaactttaaattagaattatgttatccactctttgtctttaatatctgattgtttttt |
3498841 |
T |
|
| Q |
212 |
nnnnnnnnnnnnnnctaattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgtt |
311 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498840 |
gtgtttttccttttctaattaaattgtaagatgcttgtgtgtttgacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgtt |
3498741 |
T |
|
| Q |
312 |
ctgtatcacaatcaggaaaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498740 |
ctgtatcacaatcaggaaaggttcaacttcattggtcccaaaggcctcctactcagaatgcaacaccgcccaaatggttttgcactagtaaagggctaat |
3498641 |
T |
|
| Q |
412 |
agaatgtgggccaagtgggattatagctgctgatgctatcatcacagacagtggtatgttacacgt |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3498640 |
agaatgtgggccaagtgggattatagctgctgatgctatcatcacagacagtggtatgttacacgt |
3498575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 229 - 461
Target Start/End: Complemental strand, 3510977 - 3510749
Alignment:
| Q |
229 |
attaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcagga |
328 |
Q |
| |
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||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
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| T |
3510977 |
attaaattgtaagatgcttgtgt--ctgacaattatagttgttttgatttcagctagatggcccaattttct--gtgtctgttctgtattacaatcagga |
3510882 |
T |
|
| Q |
329 |
aaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaagtg |
428 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||| | | ||| |||||||||| |
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| T |
3510881 |
tcggttcaacttcattggtcccaatggcctcctactcagaatgcaacactgcacaaatggttttgcactagtaaagggctattggcatgcgggccaagtg |
3510782 |
T |
|
| Q |
429 |
ggattatagctgctgatgctatcatcacagaca |
461 |
Q |
| |
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| |||||| | | |||||||||||||||||||| |
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| T |
3510781 |
gaattataaccggtgatgctatcatcacagaca |
3510749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 3511103 - 3511057
Alignment:
| Q |
145 |
tttatgactgaactttaaattagaattatgttatccactatttgtct |
191 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||| || ||||||| |
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|
| T |
3511103 |
tttatgacagaattttaaattagaattatgttatcctctttttgtct |
3511057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 127 - 460
Target Start/End: Original strand, 2354297 - 2354629
Alignment:
| Q |
127 |
atgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnnnnnnnnnnnnnnnnc |
226 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||| | |
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| T |
2354297 |
atgatgctggctgcgacatttatgactgaactttaaattagaattatgttatctagtctttgtctttaatatctaattgctttttgtgttttcccttt-c |
2354395 |
T |
|
| Q |
227 |
taattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcag |
326 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
2354396 |
taattaaattgtaagatgcttgtatgtgcgtgacttataattgttttgatttcagctagatggcccaattttctctgtgtctgttctgtattacaatcag |
2354495 |
T |
|
| Q |
327 |
gaaaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaag |
426 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
2354496 |
gatcggttcaacttcattggttccaaaggcctcttactcataatgcaacacgacccaaatggttttgcactagtaaagggctattagattgtgagccaag |
2354595 |
T |
|
| Q |
427 |
tgggattatagctgctgatgctatcatcacagac |
460 |
Q |
| |
|
||| |||||||||| || | |||||||||||||| |
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| T |
2354596 |
tggtattatagctggtggttctatcatcacagac |
2354629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 127 - 457
Target Start/End: Complemental strand, 2354969 - 2354640
Alignment:
| Q |
127 |
atgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnnnnnnnnnnnnnnnnc |
226 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||| || | |
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| T |
2354969 |
atgatgatggtcgcgacatttatgactgaactttaaattagaaatatgttatccagtctttgtctttagtatctgactgcttcttgtgttttcccttt-c |
2354871 |
T |
|
| Q |
227 |
taattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcag |
326 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||||||| || |||||||||||| || | ||||||| ||||| |||||||||||||||| |||||||| |
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|
| T |
2354870 |
taattatttagtaagatgcttgtgtgtctgacacttataattattttgatttcagataaaaggcccaattttctttgtgtctgttctgtattacaatcag |
2354771 |
T |
|
| Q |
327 |
gaaaggttcaacttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaag |
426 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
2354770 |
gatcggttcaacttcattggtctgaaaggcctcctactcagaatgcaacacggcccaaatggttttgcactagtaaagggctattagattgtgggccaag |
2354671 |
T |
|
| Q |
427 |
tgggattatagctgctgatgctatcatcaca |
457 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
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|
| T |
2354670 |
tgggattatagctggagatgctatcatcaca |
2354640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 2355119 - 2355045
Alignment:
| Q |
32 |
atgatttctctttttatatttgagatgaaggctgatgccatattattcaactgtcttagtgactggctgatgcca |
106 |
Q |
| |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
2355119 |
atgatttctctttttatatttgagatgaatgttgatgccatattattcaactgtcttagtgattggccgatgcca |
2355045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 2354145 - 2354222
Alignment:
| Q |
32 |
atgatttctctttttatatttgagatgaaggctgatgcca---tattattcaactgtcttagtgactggctgatgcca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| | |||||||||||| |
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|
| T |
2354145 |
atgatttctctttttatatttgagatgaaggctgatgccatattattattcagctttcttagttattggctgatgcca |
2354222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 246 - 467
Target Start/End: Original strand, 31951329 - 31951550
Alignment:
| Q |
246 |
ttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcaggaaaggttcaacttcattg |
345 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
31951329 |
ttgtgtgtctgacacttatagttgttttgatttcagctagatggcccaattttctctgtgtctgttctgtattacaatcaggatcggttcaacttcattg |
31951428 |
T |
|
| Q |
346 |
gtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaagtgggattatagctgctgat |
445 |
Q |
| |
|
|||||||||| | |||||| |||| ||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||||| ||| |
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|
| T |
31951429 |
tccccaaaggccgcatactcagaatgaaacacaacccaaatggttttgcattagtaaagggctattagattgtgggccaagtggaattatagctggagat |
31951528 |
T |
|
| Q |
446 |
gctatcatcacagacagtggta |
467 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
31951529 |
gctatcatcacagacaatggta |
31951550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 238 - 457
Target Start/End: Complemental strand, 31951279 - 31951060
Alignment:
| Q |
238 |
taagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcaggaaaggttcaa |
337 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | |||||||| ||||||| |
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|
| T |
31951279 |
taagatgcttatgtgtctgacacttatagttgttttgatttcagctagatgacccaattttctttgtgtctgttctgtattataatcaggattggttcaa |
31951180 |
T |
|
| Q |
338 |
cttcattggtcccaaaggcctcctactcaaaatgcaacaccgcccaaatggttttgcactagtaaagggctaatagaatgtgggccaagtgggattatag |
437 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
31951179 |
cttcattggtcccaaaggcctccttctaagaaggcaacacgacccaaatggttttgcactagtaaagggctattagattgtgggccaagtgggattatat |
31951080 |
T |
|
| Q |
438 |
ctgctgatgctatcatcaca |
457 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
31951079 |
ctggagatgctatcatcaca |
31951060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 22925838 - 22925947
Alignment:
| Q |
251 |
tgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgta-tcacaatcaggaaaggttcaacttcattggtcc |
349 |
Q |
| |
|
|||||||||||| | ||| ||||||||||| |||||||||| | ||||| ||||||| ||||||| || |||| || |||||||||||||||||| |
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|
| T |
22925838 |
tgtctaacacttgcaattgctttgatttcagttagatggcccgattttctttgtgtctcttctgtattctcaattagccttagttcaacttcattggtcc |
22925937 |
T |
|
| Q |
350 |
caaaggcctc |
359 |
Q |
| |
|
||| |||||| |
|
|
| T |
22925938 |
caatggcctc |
22925947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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