View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_11 (Length: 468)
Name: NF14492_low_11
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 51 - 459
Target Start/End: Original strand, 4835108 - 4835516
Alignment:
| Q |
51 |
acactttaattttgttgaaacctagtgtactagatgtgtgctagctaggtaattaaggaaagaaaagagaagctgggagtaggggttgtctgtgtctttg |
150 |
Q |
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| T |
4835108 |
acactttaattttgttgaaacctagtgtactagatgtctgctagctaggtaattaaggaaagaaaagagaagctgggagtaggggttgtctgtgtctttg |
4835207 |
T |
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| Q |
151 |
ctaagctaacatttctagcactattaattnnnnnnntggtgtatttgggttacatatttggtactgtcatcactgtaaaatctgggcttaatgaagcagc |
250 |
Q |
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| T |
4835208 |
ctaagataacttttctagcactattaattaaaaaagtggtgtatttgggttacatatttggtactgtcatcactgtaaaatctgggcttaatgaagcagc |
4835307 |
T |
|
| Q |
251 |
acagccgcaaaattagtagaatgcgtaaacaacaagtaaacatgtttctttttctgtagctagcttaatttacaacaacaaaactgtagtcatggattgc |
350 |
Q |
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| T |
4835308 |
acagccgcaaaattagtagaatgcgtaaacaacaagtaaacatgtttctttttctgtagctagcttaatttacatcaacaaaactgtagtcatggattgc |
4835407 |
T |
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| Q |
351 |
tgaattatagtgactgaccctttacttcaacaaactagggtaggcttggtcttctttattaatcaacgtctctactttctttttgtatcaattattacta |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4835408 |
tgaattatagtgactgaccctttacttcaacaaactagggtaggcttggtcttctttattaatcaacgtctctactttctttttgtatcaattattatta |
4835507 |
T |
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| Q |
451 |
tagtattat |
459 |
Q |
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| T |
4835508 |
tagtattat |
4835516 |
T |
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Back To:
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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 34126432 - 34126356
Alignment:
| Q |
331 |
aaactgtagtcatggattgctgaattatagtgactgaccctttacttcaacaaactagggtaggcttggtcttcttta |
408 |
Q |
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| T |
34126432 |
aaactgtagtcatggatcgctgaattatggtgacttaccctttacatcaacaaacta-ggtatgcttggccttcttta |
34126356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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