View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_low_12 (Length: 467)

Name: NF14492_low_12
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_low_12
NF14492_low_12
[»] chr4 (4 HSPs)
chr4 (1-458)||(2873951-2874407)
chr4 (1-313)||(2900563-2900875)
chr4 (4-313)||(2884089-2884398)
chr4 (145-191)||(51046642-51046688)
[»] chr2 (3 HSPs)
chr2 (43-323)||(44213302-44213582)
chr2 (43-313)||(44225463-44225733)
chr2 (43-313)||(44236277-44236546)
[»] chr7 (11 HSPs)
chr7 (40-228)||(39567516-39567704)
chr7 (40-221)||(39550723-39550904)
chr7 (10-228)||(39360711-39360929)
chr7 (139-221)||(39334909-39334991)
chr7 (139-221)||(39346167-39346249)
chr7 (139-221)||(39541564-39541646)
chr7 (40-194)||(39577323-39577477)
chr7 (145-217)||(42135748-42135820)
chr7 (40-83)||(42175895-42175938)
chr7 (1-83)||(42156684-42156766)
chr7 (7-80)||(42135610-42135683)
[»] chr8 (2 HSPs)
chr8 (137-197)||(4497929-4497989)
chr8 (1-59)||(4498067-4498125)


Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 2874407 - 2873951
Alignment:
1 tcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2874407 tcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtg 2874308  T
101 cagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2874307 cagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaac 2874208  T
201 tttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2874207 tttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacat 2874108  T
301 atatccaaccccagtatctgcaatagaaaaattagaggtgaaaaatgaagtcttagaaacgtcaaaattgaagactaatctaattttttcgatctttctc 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
2874107 atatccaaccccaatatctgcaatagaaaaattagaggtgaaaaatgaagtgttagaaacgtcaaaattgaagactaatctaattttttcgatctttctc 2874008  T
401 taatttttcgagagtaatttaacttttctagtataagagaactttataatagtattat 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
2874007 taatttttcgagagtaatttaacttttctagtataagagaacttta-aatagtattat 2873951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 2900563 - 2900875
Alignment:
1 tcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtg 100  Q
    ||||| |||||||| || ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||    
2900563 tcacgcggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactg 2900662  T
101 cagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaac 200  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||| || |||||||| ||||||||||||||||||| | |    
2900663 cagttccattaagaatatgaacatattgcctaagagatttcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaataaagc 2900762  T
201 tttcgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacat 300  Q
     || | ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||   ||||||||  || ||||| ||||||||||||    
2900763 atttgctggtccaaccaacatttctcctgtggtaactcgctttctttgtcctccggagataccacgtaacatttcattccccaccatagtatcagcacat 2900862  T
301 atatccaacccca 313  Q
    | |||||||||||    
2900863 acatccaacccca 2900875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 313
Target Start/End: Complemental strand, 2884398 - 2884089
Alignment:
4 cgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcag 103  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| || || || ||||||| ||  |    
2884398 cgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctcaggtgctggttggagtaaagagataactgtgg 2884299  T
104 ttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaacttt 203  Q
    |||||| |||||| | ||||||||||  ||||||| |||||||||| |||| ||||||||| || || ||||| |||||||||||||||||||   | ||    
2884298 ttccattaagaatgtgaacatattgctgaagagatctcacaatttggaaagttgtggaactgtccaaaccagtagatatttcatccatgaataatgcatt 2884199  T
204 cgatggtccaaccaacatttctcctgtggtaagtctctttctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacatata 303  Q
     | ||| || |||||||| ||||||||||||| || ||||||||| || ||||| ||||||||   ||||||||  || ||||| || |||||||||| |    
2884198 tgctggcccgaccaacatctctcctgtggtaactcgctttctttgacctccggaaataccacgcaacatttcattccccaccatagtgtcagcacataca 2884099  T
304 tccaacccca 313  Q
    ||||| ||||    
2884098 tccaatccca 2884089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 51046688 - 51046642
Alignment:
145 atttgaaaagctgtggaactatctaagccagttgatatttcatccat 191  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||    
51046688 atttgaaaagtagtggaactgtctaagccagttgatatttcatccat 51046642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 43 - 323
Target Start/End: Original strand, 44213302 - 44213582
Alignment:
43 ataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttca 142  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| ||| |||| |||||| ||||  | ||| | |||||||||||| |||||  |||    
44213302 ataatgtcatcaaaaagatcataagtctcaggtgctggctggagcagtgatataactgcagtgccattcataatgtgaacatattgcctcagagagctca 44213401  T
143 caatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctt 242  Q
    |||||||||||| ||||||||| || |  ||||| || |||||||||||||| |   | || | ||||||||||||||| |||||||||||||  | |||    
44213402 caatttgaaaagttgtggaactgtccagtccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtggtaacacgctt 44213501  T
243 tctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacatatatccaaccccagtatctgcaa 323  Q
     |||||||| ||||||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||  ||||||||    
44213502 cctttgtcctccggagataccacgcaacatttcatcccctaccatggtatccgcacatatatccaaccccaaaatctgcaa 44213582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 313
Target Start/End: Original strand, 44225463 - 44225733
Alignment:
43 ataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttca 142  Q
    ||||||||||||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| ||||  | ||| | ||||||||| || |||||  |||    
44225463 ataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctca 44225562  T
143 caatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctt 242  Q
    |||| |||||||  |||||||| || |  ||||| || |||||||||||||| |   | || | ||||||||||||||| |||||||| || |  | |||    
44225563 caatctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgctt 44225662  T
243 tctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacatatatccaacccca 313  Q
     || ||||| || |||||||||||   |||||||||||| ||||||||||| || ||||||||||||||||    
44225663 cctctgtcctccagagataccacgtaacatttcatctcccaccatggtatccgcgcatatatccaacccca 44225733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 43 - 313
Target Start/End: Original strand, 44236277 - 44236546
Alignment:
43 ataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttca 142  Q
    ||||||||||||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| ||||  | ||| | ||||||||| || |||||  |||    
44236277 ataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctca 44236376  T
143 caatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcctgtggtaagtctctt 242  Q
    |||| ||||||| ||||||||| || |  ||||| || | |||||||||||| |   | || | ||||||||||||||| |||||||| || |  | |||    
44236377 caatctgaaaagttgtggaactgtccagcccagtaga-aattcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgctt 44236475  T
243 tctttgtccaccggagataccacggtgcatttcatctcctaccatggtatcagcacatatatccaacccca 313  Q
     || ||||| || |||||||||||   |||||||||||| ||||||||||| || ||||||||||||||||    
44236476 cctctgtcctccagagataccacgtaacatttcatctcccaccatggtatccgcgcatatatccaacccca 44236546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 39567516 - 39567704
Alignment:
40 agaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatt 139  Q
    ||||||| ||| |||||||| |  ||||||||||||| |||||| || | ||||||||  || |||||||  ||||| |  |||| |||||| |  || |    
39567516 agaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctcattgaat 39567615  T
140 tcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacatttctcct 228  Q
    ||||||||||||||| ||| || ||||| || ||||| |||||||| |||||||||||| |||| |  |||||||||||||||||||||    
39567616 tcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaacatttctcct 39567704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 39550723 - 39550904
Alignment:
40 agaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatt 139  Q
    ||||||||||| |||||||| |  ||||||||||||| ||||||||| |  ||||| |  |||||||| |  ||||| |  ||| ||||| | |  || |    
39550723 agaataatgtcgtcaaaaagattgtaagtctctggtggtggctgaaggagcgagatgaccgcagttcctttgagaatgtggacaaattgcttcattgaat 39550822  T
140 tcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 221  Q
    ||||||| ||||||| ||| || ||||| || ||||| ||||||||||||||||||||| ||||||  ||||||||||||||    
39550823 tcacaatctgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaatagagctttcgccggtccaaccaacat 39550904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 39360929 - 39360711
Alignment:
10 ccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccat 109  Q
    |||||||||| ||| | || |||||| |  || |||||||| |||||||| |  |||||||||||||  ||||| || | |||||| |   | ||||| |    
39360929 ccttggtaaataatgtgactatcagagagtagtataatgtcgtcaaaaagattgtaagtctctggtggaggctgcaggagtgagatcaccacggttcctt 39360830  T
110 gaagaatataaacatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatgg 209  Q
      ||||| | |||||||||||| |  || |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| |  ||    
39360829 tgagaatgtgaacatattgcctcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagtcgg 39360730  T
210 tccaaccaacatttctcct 228  Q
    |||||||||||| ||||||    
39360729 tccaaccaacatctctcct 39360711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 39334991 - 39334909
Alignment:
139 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 221  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| | |||||||||||||||    
39334991 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacat 39334909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 39346249 - 39346167
Alignment:
139 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 221  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||| | |||| | |||||||||||||||    
39346249 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacat 39346167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 39541564 - 39541646
Alignment:
139 ttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaacat 221  Q
    |||||||||||||||| ||| || ||||| || ||||| ||||||||||||||||||||| |||| |  |||||||| |||||    
39541564 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacat 39541646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 39577323 - 39577477
Alignment:
40 agaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatt 139  Q
    ||||||||||| |||||||| |||||||||||||||| |||||| |  | |||||| |  ||||||||||  || |  |  ||||| ||| | |  ||||    
39577323 agaataatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatt 39577422  T
140 tcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaa 194  Q
    |||||| |||||||| ||| || ||||| || ||||| |||||||||||||||||    
39577423 tcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 42135748 - 42135820
Alignment:
145 atttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaacca 217  Q
    ||||||||||  || ||||||||||| || |||||||||||||||||||| || ||||| | |||||| ||||    
42135748 atttgaaaagtggttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcctacca 42135820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 42175895 - 42175938
Alignment:
40 agaataatgtcatcaaaaagttcataagtctctggtgctggctg 83  Q
    ||||||||||| |||||||||||| | |||||||||||||||||    
42175895 agaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg 42175938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 42156684 - 42156766
Alignment:
1 tcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctg 83  Q
    ||||| |||||||| || ||||||| ||| || || |  ||||||||||| ||||| |||||| | |||||||||||||||||    
42156684 tcacgtggtccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaagagttcaaatgtctctggtgctggctg 42156766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 42135610 - 42135683
Alignment:
7 ggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctgg 80  Q
    ||||||||||| ||||||| ||| || || |  || |||||||||||||| |||||| | ||||||||||||||    
42135610 ggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctgg 42135683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 4497989 - 4497929
Alignment:
137 atttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatag 197  Q
    |||||||||||||||| | ||| |||||||| |  ||||||||||||||||||||||||||    
4497989 atttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaatag 4497929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4498125 - 4498067
Alignment:
1 tcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaag 59  Q
    ||||| || |||||||| |||| || ||| ||||||| |||||||||||||||||||||    
4498125 tcacgtggaccttggtacacaacttgaccctcagatataagaataatgtcatcaaaaag 4498067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University