View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_low_15 (Length: 401)

Name: NF14492_low_15
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_low_15
NF14492_low_15
[»] chr1 (1 HSPs)
chr1 (63-401)||(27448697-27449035)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 63 - 401
Target Start/End: Complemental strand, 27449035 - 27448697
Alignment:
Q  63 ctagaacaattgtgtaatttgaacaataactttttcgacaacaaatctaagttgttgactgatataccaactgcaaatcccgttaagcatcaatgctact 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| | ||||||||||||||||||    
T  27449035 ctagaacaattgtgtaatttgaacaataactttttcgacaacaaatctaagtggttgatggatataccaactgcaaatcacattaagcatcaatgctact 27448936  T
Q  163 tgtttaactatgagtatcatgtttggtatctgtgtcagcgtttcatagatacaaatgcatgaattaaaagtgaatgtgaataagaatctcacttcattta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27448935 tgtttaactatgagtatcatgtttggtatctgtgtcagcgtttcatagatacaaatgcatgaattaaaagtgaatgtgaataagaatctcacttcattta 27448836  T
Q  263 gtatattttcagcaaggcgttcaactctcacgagtctagcaacctgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatccc 362  Q
    | |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27448835 ggatattttcagcaaggcgttcaactctcacgagtctagcgacatgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatccc 27448736  T
Q  363 atcatcgaagattactgtagagattcttgcagctttgaa 401  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  27448735 atcatcgaagatcactgtagagattcttgcagctttgaa 27448697  T

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