View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_16 (Length: 389)
Name: NF14492_low_16
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 37721172 - 37721296
Alignment:
| Q |
116 |
ttcatgtaagcgtatgcagcaagacatatcggtgactttttattaatcagtactatttacaatttctggccacaacgaatgtttcctgcttgctatatta |
215 |
Q |
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| T |
37721172 |
ttcatgtaagcgtatgcagcaagacatatcggtgactttttattaatcagtactatttacaatttctggccacaacgaatgtttcctgcttgctatatta |
37721271 |
T |
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| Q |
216 |
tattaaaaaataaacttctctcccc |
240 |
Q |
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| T |
37721272 |
tattaaaaattaaacttctctcccc |
37721296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 37721337 - 37721429
Alignment:
| Q |
281 |
cgttgtttacgaaacaatgatcaccttccgtttttnnnnnnntaaataaattaaacaatgtccatgaatttgtccgtcctgccccgtcatcca |
373 |
Q |
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| T |
37721337 |
cgttgtttacgaaacaatgatcaccttccgtttttaaaaaaataaataaattaaacaatgtccatgaatttgtccgtcctgccccgtcatcca |
37721429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 37721048 - 37721084
Alignment:
| Q |
14 |
ttctaatagtagcacatacttgacaaccactccaaac |
50 |
Q |
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| T |
37721048 |
ttctaatagtagcacatacttgacaaccactccaaac |
37721084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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