View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_17 (Length: 387)
Name: NF14492_low_17
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 3884183 - 3883834
Alignment:
| Q |
12 |
gtgagatgaaaggtaagtaccaaggtatactatagataagaattaatctttaagttacctttagattgtacacaagtttatcagtctcaacatcaattat |
111 |
Q |
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| T |
3884183 |
gtgaaatgaaaggtaagtaccaaggtatactatagataagaattaatctttaagttacctttagattgtacacaagtttatcagtctcaacatcaattat |
3884084 |
T |
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| Q |
112 |
tttgagattatttccagtagcagtagctagaagcatgccaaggggctggaatctaacttgtttactacctccctgcaatatgttattatcattaatcggc |
211 |
Q |
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| T |
3884083 |
tttgagattatttccagtagcagtagctagaagcatgccaagaggctggaatctaacttgtttactacctccctgcaatatgttattatcattaatcggc |
3883984 |
T |
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| Q |
212 |
ttcctgttttcatagcagatgtttaagcatgtgaatgagtacatcacgtctagctaaaatgtcaccacaattttctaaaataatgtatccagaccaactg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3883983 |
ttcctgttttcatagcagatgtttaagcatgtgaatgagaacatcacgtctagctaaaatgtcaccagaattttctaaaataatgtatccagaccaactg |
3883884 |
T |
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| Q |
312 |
catacttttgtacatgacaaattgacaatagagatttaatcctaccaaatcaataaag |
369 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3883883 |
catacttttgtacatg--------acaatagagatttaatcctaccaaatcaataaag |
3883834 |
T |
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