View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_19 (Length: 378)
Name: NF14492_low_19
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 38981006 - 38980642
Alignment:
| Q |
17 |
agacaaagcactctatatgtttcagatcatagcagctttcacattattaaaccctaattatatgattnnnnnnnngtgcattattaaaagagagtgagaa |
116 |
Q |
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| T |
38981006 |
agacaaagcactctatatgtttcagatcatagcagctttcacattattaaaccctaattatatgattaaaaaaaagtgcattattaaaagagagtgagaa |
38980907 |
T |
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| Q |
117 |
ttgatctctaatgagttgcacttgcaccttgtgctggtggtggaacttgttgttgttgt---ggtggtggacgctttcgtttcttcttctcgtaactaat |
213 |
Q |
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| T |
38980906 |
ttgatctctaatgagttgcacttgcaccttgtgctggtggtggaacttgttgttgttgttgtggtggtggacgctttcgtttcttcttctcgtaactaat |
38980807 |
T |
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| Q |
214 |
acctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctcacagctctagcaccaaatggatttgtttctggttttcctccattttcttca |
313 |
Q |
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| T |
38980806 |
acctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctcacagctctagcaccaaatggatttgtttctggttttcctccattttcttca |
38980707 |
T |
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| Q |
314 |
aaggcggcacgaagacgacctatgagtgcatcaaggcttctccatgcttgcctcagaggacatgg |
378 |
Q |
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| T |
38980706 |
aaggcggcacgaagacgacctatgagtgcatcaaggcttccccatgcttgcctcagaggacatgg |
38980642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 30503807 - 30503992
Alignment:
| Q |
163 |
ttgttgttgttgtggtggtggacgctttcgtttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctc |
262 |
Q |
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| T |
30503807 |
ttgtggttgttgttgtggtggacgtttccttttcttcttctcataactaatacctcttgctttggattgaagatcacgaacctcacgaaggtaaagtcta |
30503906 |
T |
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| Q |
263 |
acagctctagcaccaaatggatttgtttctggttttcctccattttcttcaaaggcggcacgaagacgacctatgagtgcatcaag |
348 |
Q |
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| T |
30503907 |
acagctctagcaccaaatggatttgtttctggcttccctccattttcctcaaaagctgcccttaaacgacctatcagtgcatcaag |
30503992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 15970571 - 15970438
Alignment:
| Q |
182 |
ggacgctttcgtttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctcacagctctagcaccaaatg |
281 |
Q |
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| T |
15970571 |
ggacgcttgcgcttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgggcaccaaaag |
15970472 |
T |
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| Q |
282 |
gatttgtttctggttttcctccattttcttcaaa |
315 |
Q |
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| T |
15970471 |
gattagcttctggcttcccaccattctcttcaaa |
15970438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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