View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_low_20 (Length: 377)

Name: NF14492_low_20
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_low_20
NF14492_low_20
[»] chr4 (4 HSPs)
chr4 (1-205)||(2873620-2873824)
chr4 (224-369)||(2873817-2873961)
chr4 (119-194)||(2901380-2901455)
chr4 (130-194)||(2883510-2883574)
[»] chr2 (3 HSPs)
chr2 (114-189)||(44214023-44214098)
chr2 (130-189)||(44237002-44237061)
chr2 (161-189)||(44226188-44226216)
[»] chr7 (2 HSPs)
chr7 (131-189)||(39334417-39334475)
chr7 (131-189)||(39568129-39568187)
[»] chr1 (1 HSPs)
chr1 (131-195)||(2164586-2164650)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2873620 - 2873824
Alignment:
Q  1 gattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttannnnnnnnnnnnnng 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |    
T  2873620 gattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttattttttatttttttg 2873719  T
Q  101 tgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaaagaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873720 tgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaaagaaac 2873819  T
Q  201 tacat 205  Q
    |||||    
T  2873820 tacat 2873824  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 224 - 369
Target Start/End: Original strand, 2873817 - 2873961
Alignment:
Q  224 aactacgttatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 323  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873817 aactacattatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 2873916  T
Q  324 ggaaagtctgataacagactatatgctgaaggtaaataatactatt 369  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||    
T  2873917 ggaaagtctgataaccgattatatgctgaaggt-aataatactatt 2873961  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 2901455 - 2901380
Alignment:
Q  119 tctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 194  Q
    |||||||| | |||||||||||| ||||||||||| |  ||||||||||||||||||||||  |||||||| ||||    
T  2901455 tctgagttgtctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtctttatgaaggtaagaa 2901380  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 2883510 - 2883574
Alignment:
Q  130 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 194  Q
    |||||||||||| |||||||| || |  |||||||||||| ||||||||| ||||||||||||||    
T  2883510 tagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtcttcatgaaggtgagaa 2883574  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 44214098 - 44214023
Alignment:
Q  114 tgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 189  Q
    ||||||||||| | | ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44214098 tgctatctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44214023  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 44237061 - 44237002
Alignment:
Q  130 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 189  Q
    ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44237061 tagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44237002  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 44226216 - 44226188
Alignment:
Q  161 gacccagatattgatgtctacatgaaggt 189  Q
    |||||||||||||||||||||||||||||    
T  44226216 gacccagatattgatgtctacatgaaggt 44226188  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 39334417 - 39334475
Alignment:
Q  131 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 189  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39334417 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39334475  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 39568187 - 39568129
Alignment:
Q  131 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 189  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39568187 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39568129  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 2164650 - 2164586
Alignment:
Q  131 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaaa 195  Q
    |||||||| || ||||||||||| | |||||| || ||| |||||| ||| ||||||||||||||    
T  2164650 agaagagagaaggaagcaaagattaaaccagatcctgatgttgatgcctatatgaaggtgagaaa 2164586  T

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