View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_21 (Length: 372)
Name: NF14492_low_21
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 3498251 - 3498598
Alignment:
| Q |
15 |
tcaactacaacagcagctatcacagaaccaccacgcattggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
3498251 |
tcaactacaacagcagctatcacagaaccaccacgcgttggatcaaaggctacccctgctacaccacaacactgggtagagggtgcagcttcagaactca |
3498350 |
T |
|
| Q |
115 |
catatgctgaaaaatttgaaactgttgagcagtgaagtggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498351 |
catatgctgaaaaatttgaaactgttgagcagtgaagtggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagtt |
3498450 |
T |
|
| Q |
215 |
gggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggcaaaaccgcccatactataacggtagct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3498451 |
gggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggcaaaaccacccatactataacggtagct |
3498550 |
T |
|
| Q |
315 |
ggattaaaagctagcacaccggccacgtgtaacataccactgtctgtg |
362 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498551 |
ggactaaaagctagcacaccggccacgtgtaacataccactgtctgtg |
3498598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 3510582 - 3510734
Alignment:
| Q |
191 |
taaaggggcaaaaccaatccagttgggtgggctaagaggtg---ctgaagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggc |
287 |
Q |
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|||||| ||||||||| |||||||||||| ||||||||||| | | | | |||||| ||||||||||||||| |||| |||||| | |||||| |
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| T |
3510582 |
taaaggtgcaaaaccactccagttgggtgcgctaagaggtggcacgccattattgatacttttcttgggagaaaattggagactatttccacgaccaggc |
3510681 |
T |
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| Q |
288 |
aaaaccgcccatactataacggtagctggattaaaagctagcacaccggccac |
340 |
Q |
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| |||| ||||||| |||| || ||||||||||| |||| ||||||||||||| |
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| T |
3510682 |
ataacctcccatacaataatggcagctggattaacagctggcacaccggccac |
3510734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 3510530 - 3510583
Alignment:
| Q |
105 |
tcagtactcacatatgctgaaaaatttgaaactgttgagcagtgaagtggtata |
158 |
Q |
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|||| |||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
3510530 |
tcaggactcacatatgctgaaaattttgaaactggcgagcagtgaagtggtata |
3510583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 3510425 - 3510495
Alignment:
| Q |
15 |
tcaactacaacagcagctatcacagaaccaccacgcattggatcaaaggctacccctgctacaccacaaca |
85 |
Q |
| |
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||||||| |||||||||||||||||||| |||| | ||||| |||||| |||||||||||||| |||| |
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| T |
3510425 |
tcaactatcacagcagctatcacagaaccgtcacgagtcggatcgaaggctgcccctgctacaccagaaca |
3510495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 174 - 362
Target Start/End: Complemental strand, 31951725 - 31951537
Alignment:
| Q |
174 |
ctgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
273 |
Q |
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|||||||||| ||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951725 |
ctgaacaaaatggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
31951626 |
T |
|
| Q |
274 |
ttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtg |
362 |
Q |
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|||| |||||||| || || | ||||| ||||| |||||||||||||||||| ||||||||||||| || || ||||| |||||||| |
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| T |
31951625 |
ttccatgtccaggagaagcctcacatacaataacagtagctggattaaaagctcgcacaccggccacatgcaatgtaccattgtctgtg |
31951537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 173 - 326
Target Start/End: Original strand, 31950874 - 31951027
Alignment:
| Q |
173 |
actgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagacca |
272 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
31950874 |
actgaacaaaaaggcagctaaaggagcaaaaccactccagttgggtgggctaagaggtgttgaagttgtaatacttgtcttgggagcaaattccagacca |
31950973 |
T |
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| Q |
273 |
tttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagct |
326 |
Q |
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|||| |||||| | ||||| ||||||| |||||||||||||||||||||||| |
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| T |
31950974 |
gttccatgtccatgagaaacctcccatacaataacggtagctggattaaaagct |
31951027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 31951815 - 31951721
Alignment:
| Q |
31 |
ctatcacagaaccaccacgcattggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
125 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||| |
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| T |
31951815 |
ctatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaa |
31951721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 31950785 - 31950879
Alignment:
| Q |
31 |
ctatcacagaaccaccacgcattggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
125 |
Q |
| |
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|||||||||||| ||||| | |||||||||||||||||| ||||||||||||| | ||||| | ||||||||||| |||||||||| ||||| |
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| T |
31950785 |
ctatcacagaacaaccacatgtcggatcaaaggctacccctactacaccacaacacttggtagtgagtgcagcttcaaaactcacatatactgaa |
31950879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 35567823 - 35567868
Alignment:
| Q |
102 |
gcttcagtactcacatatgctgaaaaatttgaaactgttgagcagt |
147 |
Q |
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||||||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
35567823 |
gcttcaggactcacatatgccgaaaaatttgaaactggtgagcagt |
35567868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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