View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_22 (Length: 358)
Name: NF14492_low_22
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 55172401 - 55172073
Alignment:
| Q |
16 |
cacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattaa |
115 |
Q |
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| T |
55172401 |
cacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattat |
55172302 |
T |
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| Q |
116 |
ttatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcat |
215 |
Q |
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| T |
55172301 |
ttatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcat |
55172202 |
T |
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| Q |
216 |
ttgttaatggacaatacattggtaagaacataatttcaataataaacggcaatggtgagtgagaggagaggaaatggcaagagttttatatgattctaac |
315 |
Q |
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| T |
55172201 |
ttgttaatggacaatacattggtaagaacataatttcaataataaacgacaatggtgagtgataggagaggaaatggcaagagttttatatgattctaac |
55172102 |
T |
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| Q |
316 |
tttgatttgtaataggtactgatcatggt |
344 |
Q |
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| T |
55172101 |
tttgatttgtaataggtactgatcatggt |
55172073 |
T |
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