View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_23 (Length: 358)
Name: NF14492_low_23
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 159 - 340
Target Start/End: Complemental strand, 37574391 - 37574210
Alignment:
| Q |
159 |
ctatatattttgtttgtttgacgcaatatatactattatttcttgatttctccgatatgtatgtggtgtgcggtttggttcggttctaaaaaagaaattt |
258 |
Q |
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| T |
37574391 |
ctatatattttgtttgtttgacgcaatatatactattatttcttgatttctccgatatgtatgtggtgcgcggtttggttcagttctaaaaaaaaaaact |
37574292 |
T |
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| Q |
259 |
ataattcaacctaactcgagcgattgatataaaactacattcaaatacatataatatatttcgattttgtgcgatctttttt |
340 |
Q |
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| T |
37574291 |
ataattcaacctaactcgagcgattgatacaaaactacattcaaatacatccaatatatttcgattttgtgcggtctttttt |
37574210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 37574551 - 37574464
Alignment:
| Q |
5 |
tctagctacccctacgtgtgaagagtgcgatgctaatacacgcgctcactcaattcatgtgtttgttcaattcatatgtccacatgac |
92 |
Q |
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| T |
37574551 |
tctagctacccctacgtgtgaagagcgcaatgctaatacacgcgctcactcaattcatgtgtttgttcaattcatatgtccacatgac |
37574464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 32971611 - 32971676
Alignment:
| Q |
262 |
attcaacctaactcgagcgattgatataaaactacattcaaatacatataatatatttcgattttg |
327 |
Q |
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| T |
32971611 |
attcaatctaactcgagcgatggatagaaaactacattcaaaaacatctaatatatttcgattttg |
32971676 |
T |
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