View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_33 (Length: 307)
Name: NF14492_low_33
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_33 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 35676266 - 35676534
Alignment:
| Q |
21 |
atcggaaaaaacagtacatgcaacgtgacttgttctcattgtatgctttgattttcaccttatcattattcattattagtacaatcatttagtcaccata |
120 |
Q |
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| T |
35676266 |
atcggaaaaaacagtacatgcaacgtgacttgttctcatcgtatgctttgattttcaccttatcattattcattattagtacaatcatttagtcaccata |
35676365 |
T |
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| Q |
121 |
attaaatataatatagaggaagatatgagaagaagaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatag |
220 |
Q |
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| T |
35676366 |
a----atataatatagaggaagatatgagaa---gaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatag |
35676458 |
T |
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| Q |
221 |
aaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
296 |
Q |
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| T |
35676459 |
aaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
35676534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 35655383 - 35655466
Alignment:
| Q |
213 |
ctcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
296 |
Q |
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| T |
35655383 |
ctcaacagaaaccaaaggttaagccatgtccacctttctacacagttctctttcacaggaaatcttctcttcattccctatgct |
35655466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 35645953 - 35646038
Alignment:
| Q |
211 |
cactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
296 |
Q |
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| T |
35645953 |
cactcaacaaaaaccaaagcttaagccatgtccaccattctgccaagttctctttcacatgaaatcttctcttcattccgtatgct |
35646038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 35672949 - 35673025
Alignment:
| Q |
222 |
aaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttc--tcttcattccctatgct |
296 |
Q |
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| T |
35672949 |
aaccaaaggttaagccatgtccacctttctacaaaattctctttcgcatgaaagtttctatattcattccctatgct |
35673025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 4203 - 4273
Alignment:
| Q |
226 |
aaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
296 |
Q |
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| T |
4203 |
aaagcttaagccatgtccacctttctacaatgttctctttcgcatgaaagcttctattcattccctatgct |
4273 |
T |
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