View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_38 (Length: 274)
Name: NF14492_low_38
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_38 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 30942095 - 30941822
Alignment:
| Q |
1 |
taagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaacctt |
100 |
Q |
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| T |
30942095 |
taagagcatctaagcttccccaagcttgtctaagaggacaagtacaaggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaacctt |
30941996 |
T |
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| Q |
101 |
agtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattga |
200 |
Q |
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| T |
30941995 |
agtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattga |
30941896 |
T |
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| Q |
201 |
ccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatga |
274 |
Q |
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| T |
30941895 |
ccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatga |
30941822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
194 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
238 |
Q |
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| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 39556592 - 39556357
Alignment:
| Q |
15 |
cttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaatt |
114 |
Q |
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| T |
39556592 |
cttccccaagcttgtctaagtggacatgtacaaggtgctggtggctctggctgtccataaaacatacaaccttgtaaatgaactttggtttttccaaatt |
39556493 |
T |
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| Q |
115 |
ggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttcca |
214 |
Q |
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| T |
39556492 |
gatctaaatacctaagaaattccaacacatggttggaattgcagtgagaaagtggaacgggtggtcttaggttgtttaagtattgaccaaaagtgttcca |
39556393 |
T |
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| Q |
215 |
atctcttctcttttgtgattcgtagcgactaagtgt |
250 |
Q |
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| T |
39556392 |
atctcttctcttttgagattcatagcggctaagtgt |
39556357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 32002165 - 32002397
Alignment:
| Q |
15 |
cttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaatt |
114 |
Q |
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| T |
32002165 |
cttccccaagcttgttttagaggacaagtacatggtccaggtggttcggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaatt |
32002264 |
T |
|
| Q |
115 |
ggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttcca |
214 |
Q |
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| T |
32002265 |
gatccaagtaccttaggaattcaagaacatggtttgaattacaatttgatagtgccactggtggtctttgattccttaagtattgtccaaaagtgttcca |
32002364 |
T |
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| Q |
215 |
atctcttctcttttgtgattcgtagcgactaag |
247 |
Q |
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| T |
32002365 |
atctcttctcttttgtgactcgtatcgactaag |
32002397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 4863244 - 4863129
Alignment:
| Q |
18 |
ccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggt |
117 |
Q |
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|||||||||||||| | ||||| ||||||||||| || || || |||||||| |||| || ||||| || | ||||||||||| ||||||||||| | |
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| T |
4863244 |
ccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgat |
4863145 |
T |
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| Q |
118 |
ctaagtaacgaaggaa |
133 |
Q |
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| T |
4863144 |
ctaagtaacgaaggaa |
4863129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 35814703 - 35814540
Alignment:
| Q |
15 |
cttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaatt |
114 |
Q |
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|||||||||||||| | |||||||| | ||| ||||||||||| ||||||||| | || || |||||||| | ||||||||||| || ||||||| |
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| T |
35814703 |
cttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaaccttagtcttaccaaatt |
35814604 |
T |
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| Q |
115 |
ggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtgg |
178 |
Q |
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| || | ||||||||| ||||| | |||||||||| || || ||||| ||||||||| |||| |
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| T |
35814603 |
gatcaaggtaacgaagaaaatcaagaacatggttgaagttacagtgtgatagtggaactagtgg |
35814540 |
T |
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