View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_41 (Length: 267)
Name: NF14492_low_41
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 54389881 - 54390131
Alignment:
| Q |
1 |
cagagtgactgcaaaatgaatatgctatacgtaaatcctaaacacaaatagaatttaaatagaaaaagagacaataaataatgtgatgattatattaaga |
100 |
Q |
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| T |
54389881 |
cagagtgactgcaaaatgaatatgctatacgtaaatcctaaacacaaatggaatttaaatagaaaaagagacaataaataatgtgatgattatattaaga |
54389980 |
T |
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| Q |
101 |
ggtattgaagtgtgccaagaaagtatctgtatagcacatcaataaattaaattactaaaactacgtcataaggccttcctttttggtacaaatgcttaag |
200 |
Q |
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| T |
54389981 |
ggtattgaagtgtgccaagaaagtatctgtatagcacatcaataaattaaattactaaaactacgtcataaggccttcttttttggtacaaatgcttaag |
54390080 |
T |
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| Q |
201 |
aaatatgatattactcaaaaccagaacatagcaaagcggcatcacatacct |
251 |
Q |
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| T |
54390081 |
aaatatgatattactcaaaaccagaacatagcaaagcggcatcacatacct |
54390131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 5728606 - 5728542
Alignment:
| Q |
128 |
tgtatagcacatcaataaattaaattactaaaactacgtcataaggccttcctttttggtacaaa |
192 |
Q |
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| T |
5728606 |
tgtatagcatatcaataaattaaattactagtactacgtcataagaccttctttttcggtacaaa |
5728542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 5728987 - 5728938
Alignment:
| Q |
66 |
aagagacaataaataatgtgatgattatattaagaggtattgaagtgtgc |
115 |
Q |
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| T |
5728987 |
aagagacgataaacaatgtgatgattatattaagaggcattgaagtgtgc |
5728938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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