View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_low_5 (Length: 614)

Name: NF14492_low_5
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_low_5
NF14492_low_5
[»] chr5 (24 HSPs)
chr5 (241-603)||(3189555-3189917)
chr5 (17-181)||(3189916-3190081)
chr5 (220-365)||(38952157-38952300)
chr5 (285-366)||(10471026-10471107)
chr5 (381-436)||(7944416-7944471)
chr5 (380-436)||(39038648-39038704)
chr5 (381-436)||(858019-858074)
chr5 (381-436)||(4738061-4738116)
chr5 (381-436)||(22701742-22701797)
chr5 (381-436)||(31752245-31752300)
chr5 (381-436)||(32736389-32736444)
chr5 (381-433)||(6260992-6261044)
chr5 (404-436)||(38952341-38952373)
chr5 (381-436)||(3039004-3039058)
chr5 (393-436)||(4083879-4083922)
chr5 (381-436)||(9124833-9124888)
chr5 (381-436)||(14369896-14369951)
chr5 (382-436)||(15294168-15294222)
chr5 (407-436)||(6436578-6436607)
chr5 (407-436)||(17232914-17232943)
chr5 (379-436)||(17233272-17233329)
chr5 (391-436)||(28747902-28747947)
chr5 (407-436)||(33696208-33696237)
chr5 (381-437)||(2528898-2528954)
[»] scaffold0325 (1 HSPs)
scaffold0325 (381-436)||(6683-6738)
[»] chr8 (31 HSPs)
chr8 (381-436)||(184104-184159)
chr8 (381-435)||(25123658-25123712)
chr8 (381-437)||(7089974-7090030)
chr8 (381-433)||(10776976-10777028)
chr8 (381-436)||(1201667-1201722)
chr8 (381-436)||(25123376-25123431)
chr8 (381-436)||(26630027-26630082)
chr8 (381-436)||(27545758-27545813)
chr8 (381-436)||(34102998-34103053)
chr8 (381-436)||(35550735-35550790)
chr8 (381-436)||(42556680-42556735)
chr8 (381-433)||(9484064-9484116)
chr8 (381-433)||(17691216-17691268)
chr8 (381-437)||(23544936-23544992)
chr8 (381-433)||(30207168-30207220)
chr8 (381-436)||(2823745-2823800)
chr8 (381-436)||(13468445-13468500)
chr8 (381-436)||(26868067-26868122)
chr8 (381-436)||(32069020-32069075)
chr8 (381-436)||(34969942-34969997)
chr8 (381-436)||(39922418-39922473)
chr8 (401-436)||(44873133-44873168)
chr8 (381-436)||(45299731-45299785)
chr8 (296-366)||(44874191-44874261)
chr8 (391-436)||(8258475-8258520)
chr8 (407-436)||(26043110-26043139)
chr8 (407-436)||(36899735-36899764)
chr8 (381-433)||(3369713-3369765)
chr8 (381-433)||(5946930-5946982)
chr8 (381-433)||(13269378-13269430)
chr8 (381-433)||(30633208-30633260)
[»] chr6 (8 HSPs)
chr6 (381-436)||(4898443-4898498)
chr6 (381-436)||(18102830-18102885)
chr6 (382-436)||(14488440-14488494)
chr6 (381-437)||(33730659-33730715)
chr6 (381-436)||(25061795-25061849)
chr6 (390-450)||(9406733-9406793)
chr6 (381-436)||(4838422-4838477)
chr6 (408-436)||(11742490-11742518)
[»] chr4 (24 HSPs)
chr4 (381-436)||(102257-102312)
chr4 (381-433)||(33106058-33106110)
chr4 (381-433)||(38425572-38425624)
chr4 (381-436)||(15725325-15725380)
chr4 (381-436)||(23383936-23383991)
chr4 (381-436)||(26335887-26335942)
chr4 (381-436)||(38425662-38425717)
chr4 (381-436)||(49425770-49425825)
chr4 (382-436)||(6192965-6193019)
chr4 (391-436)||(142775-142820)
chr4 (380-432)||(11777510-11777562)
chr4 (381-433)||(52306914-52306966)
chr4 (381-436)||(40496152-40496207)
chr4 (381-436)||(45875905-45875960)
chr4 (381-436)||(46106820-46106875)
chr4 (391-433)||(13211553-13211595)
chr4 (382-436)||(14948269-14948323)
chr4 (382-436)||(20458842-20458896)
chr4 (382-436)||(36955503-36955557)
chr4 (391-436)||(4712814-4712859)
chr4 (391-436)||(9744142-9744187)
chr4 (407-436)||(49606168-49606197)
chr4 (408-436)||(6946813-6946841)
chr4 (381-433)||(16553571-16553623)
[»] chr1 (30 HSPs)
chr1 (235-362)||(13071631-13071752)
chr1 (381-436)||(28704494-28704549)
chr1 (382-436)||(13157277-13157331)
chr1 (380-436)||(10558208-10558264)
chr1 (381-437)||(51431991-51432047)
chr1 (381-436)||(10764743-10764798)
chr1 (381-436)||(16073434-16073489)
chr1 (381-436)||(20201696-20201751)
chr1 (241-366)||(9005191-9005310)
chr1 (384-437)||(34515124-34515177)
chr1 (381-434)||(50559248-50559301)
chr1 (392-436)||(463014-463058)
chr1 (380-436)||(14387251-14387307)
chr1 (381-436)||(158410-158465)
chr1 (381-436)||(26842994-26843049)
chr1 (381-436)||(28764545-28764600)
chr1 (381-436)||(33676158-33676213)
chr1 (381-436)||(36389455-36389510)
chr1 (390-436)||(3977968-3978014)
chr1 (285-359)||(28182180-28182254)
chr1 (407-436)||(6192420-6192449)
chr1 (407-436)||(16005735-16005764)
chr1 (380-433)||(42199996-42200049)
chr1 (380-433)||(42208864-42208917)
chr1 (381-433)||(13157556-13157608)
chr1 (381-433)||(23413779-23413831)
chr1 (408-436)||(28454876-28454904)
chr1 (381-433)||(32994184-32994236)
chr1 (381-433)||(41146394-41146446)
chr1 (381-433)||(45818925-45818977)
[»] chr2 (15 HSPs)
chr2 (382-436)||(8386692-8386746)
chr2 (381-436)||(23387271-23387326)
chr2 (381-436)||(29511961-29512016)
chr2 (381-436)||(33739542-33739597)
chr2 (381-436)||(34082562-34082617)
chr2 (391-460)||(43660816-43660886)
chr2 (391-436)||(16513225-16513270)
chr2 (381-433)||(1750332-1750384)
chr2 (381-436)||(1576648-1576703)
chr2 (381-436)||(11675147-11675202)
chr2 (381-436)||(23664743-23664798)
chr2 (381-436)||(45629732-45629787)
chr2 (382-436)||(13002167-13002221)
chr2 (382-436)||(37169552-37169606)
chr2 (382-436)||(42850011-42850065)
[»] chr3 (19 HSPs)
chr3 (380-436)||(17605606-17605662)
chr3 (381-436)||(12127675-12127730)
chr3 (381-436)||(13349269-13349324)
chr3 (381-436)||(22894550-22894605)
chr3 (381-436)||(27360129-27360184)
chr3 (380-433)||(50913006-50913059)
chr3 (381-433)||(53581693-53581745)
chr3 (381-433)||(54244755-54244807)
chr3 (381-436)||(1376000-1376055)
chr3 (381-436)||(3269504-3269559)
chr3 (381-436)||(33837812-33837867)
chr3 (381-436)||(36824089-36824144)
chr3 (381-436)||(50801708-50801763)
chr3 (381-436)||(50874117-50874172)
chr3 (381-436)||(53467354-53467409)
chr3 (382-436)||(29239597-29239651)
chr3 (408-437)||(30685202-30685231)
chr3 (391-436)||(48765213-48765258)
chr3 (407-459)||(22894875-22894927)
[»] scaffold0627 (1 HSPs)
scaffold0627 (381-436)||(4203-4258)
[»] chr7 (14 HSPs)
chr7 (381-436)||(939040-939095)
chr7 (381-436)||(19069541-19069596)
chr7 (381-436)||(28912227-28912282)
chr7 (381-433)||(454249-454301)
chr7 (381-437)||(18352310-18352366)
chr7 (381-436)||(2509317-2509372)
chr7 (381-436)||(6559499-6559554)
chr7 (393-436)||(9401652-9401695)
chr7 (381-436)||(11766266-11766321)
chr7 (381-436)||(15957210-15957265)
chr7 (381-436)||(25818630-25818685)
chr7 (382-436)||(23740185-23740239)
chr7 (391-436)||(2362905-2362950)
chr7 (407-436)||(38796819-38796848)
[»] scaffold1717 (1 HSPs)
scaffold1717 (405-437)||(1376-1408)
[»] scaffold1527 (1 HSPs)
scaffold1527 (405-437)||(1622-1654)
[»] scaffold0418 (1 HSPs)
scaffold0418 (381-436)||(5827-5882)
[»] scaffold0015 (1 HSPs)
scaffold0015 (381-436)||(9729-9784)
[»] scaffold0217 (1 HSPs)
scaffold0217 (381-433)||(20619-20671)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 241 - 603
Target Start/End: Complemental strand, 3189917 - 3189555
Alignment:
Q  241 agcaacatgcatcttttgatgtatttagtcgctttttaattatgatgacatgccaaaacactctttctaaaatataagtgagtttattctagcaaatgtt 340  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||    
T  3189917 agcaacatgcatcttttgatgtatttagtcactttttaattatgatgacatgctaaaacactttttttaaaatataagtgagtttattctagcaaatgtt 3189818  T
Q  341 tgtggaagttgttaacttatacccacnnnnnnnnnnnaaatgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttctta 440  Q
    ||||| ||||||||||||||| ||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3189817 tgtgggagttgttaacttatatccacttttctttttaaaatgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttctta 3189718  T
Q  441 aaatactcctcctataaaacttatttaatactctaaattaaatttagaaaaatcaattttggtaagtagtacattaattatataggtccacctatgccca 540  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3189717 aaatactccttctataaaacttatttaatactctaaattaaatttagaaaaatcaattttggtaagtagtacattaattatataggtccacctatgccca 3189618  T
Q  541 cgtgatagcttaaaacatgaggcaacaaagaaagtattactacctaggattttgatgttgatg 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3189617 cgtgatagcttaaaacatgaggcaacaaagaaagtattactacctaggattttgatgttgatg 3189555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 3190081 - 3189916
Alignment:
Q  17 tatttaccttacgcccgtgcatgataaatattgcactacattcaaatagttnnnnnnnnnnnnnnnnnn-gaggagccaataaaccatggaaaatagata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||    
T  3190081 tatttaccttacgcccgtgcatgataaatattgcactacattcaaatagttaaaagtaaaaaaataaaaagaggagccaataaaccatggaaaatagata 3189982  T
Q  116 tgcaaatctactcaacagcatttagaagaaatgataggatcttttctaacttaatcaaagttttag 181  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3189981 tgcaaatctactcaaaagcatttagaagaaatgataggatcttttctaacttaatcaaagttttag 3189916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 220 - 365
Target Start/End: Original strand, 38952157 - 38952300
Alignment:
Q  220 agtttttatgaag-tgtatttcagcaacatgcatcttttgatgtatttagtcgctttttaattatgatgacatgccaaaacactctttctaaaatataag 318  Q
    ||||||||||||| || |||| ||||| |||||| ||| |||||||||||   ||||||| ||||||   ||||||||||||||| || ||||| |||||    
T  38952157 agtttttatgaaggtggattttagcaaaatgcatatttggatgtatttagctactttttagttatga---catgccaaaacactccttataaaaaataag 38952253  T
Q  319 tgagtttattctagcaaatgtttgtggaagttgttaacttataccca 365  Q
    || || |||| ||||||||||||||||| |||||||||||| |||||    
T  38952254 tgggtgtattttagcaaatgtttgtggacgttgttaacttacaccca 38952300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 10471026 - 10471107
Alignment:
Q  285 atgacatgccaaaacactctttctaaaatataagtgagtttattctagcaaatgtttgtggaagttgttaacttatacccac 366  Q
    ||||||||| ||||||||  |||||||| ||||||| || |||| |||||||||||||||| ||||| ||||||| ||||||    
T  10471026 atgacatgctaaaacactaattctaaaacataagtgggtgtattttagcaaatgtttgtgggagttgctaacttacacccac 10471107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 7944416 - 7944471
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  7944416 tgtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctt 7944471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 39038648 - 39038704
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||  |||||||||||| || |||||||||||||||||||||||| |||||    
T  39038648 atgtgttttagcaacattcactttaaggtgtatttaacaactttttagttaaatctt 39038704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 858019 - 858074
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  858019 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 858074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 4738061 - 4738116
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  4738061 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 4738116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 22701797 - 22701742
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | ||||||||||| |||||||||||||||||||||    
T  22701797 tgtgttttagcaacattcaccttaaagtgtatttcacaactttttagttatatctt 22701742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 31752245 - 31752300
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  31752245 tgtgttttagcaacattcaccttaatgtgtatttaacaactttttagttatatctt 31752300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 32736389 - 32736444
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  32736389 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 32736444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 6261044 - 6260992
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||| ||||||||||| | || ||||||||||| |||||||||||||||    
T  6261044 tgtgttttaacaacattcaccttaaggtgtatttaaccactttttagttatat 6260992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 436
Target Start/End: Original strand, 38952341 - 38952373
Alignment:
Q  404 aaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||||||||||||||||||||||||||    
T  38952341 aaagtgtatttaacaactttttagttatatctt 38952373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 3039004 - 3039058
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | || ||||||||||||| ||||||||||||||||    
T  3039004 tgtgttttaacaacattcaccttaaggtgtatttaacaa-tttttagttatatctt 3039058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 4083879 - 4083922
Alignment:
Q  393 acattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| | || ||||||||||||||||||||||||||||||    
T  4083879 acattcaccttaaggtgtatttaacaactttttagttatatctt 4083922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 9124833 - 9124888
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||| ||||||||||||||||    
T  9124833 tgtgttttagcaacattcaccttaaggtgtatttaacaaatttttagttatatctt 9124888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 14369896 - 14369951
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||| ||||||||||||||||||||||||    
T  14369896 tgtgttttagcaacattcaccttaaggtgtagttaacaactttttagttatatctt 14369951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 15294168 - 15294222
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||| ||||||||||  | ||||||||||||||||||||||| |||| ||||    
T  15294168 gtgttttaacaacattcatcttaaagtgtatttaacaactttttaattatgtctt 15294222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Original strand, 6436578 - 6436607
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  6436578 gtgtatttaacaactttttagttatatctt 6436607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Complemental strand, 17232943 - 17232914
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  17232943 gtgtatttaacaactttttagttatatctt 17232914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 17233329 - 17233272
Alignment:
Q  379 aatgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||  |||| ||||| | ||| | |||||||||||||||||||||||||||    
T  17233329 aatgtgttttagcaacgttcaccttaaaatatatttaacaactttttagttatatctt 17233272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 28747902 - 28747947
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||| | ||  |||||||||||||||||||||||||||||    
T  28747902 caacattcaccttaagatgtatttaacaactttttagttatatctt 28747947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Original strand, 33696208 - 33696237
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  33696208 gtgtatttaacaactttttagttatatctt 33696237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 2528898 - 2528954
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttc 437  Q
    ||||||||  |||||||||| | || |||||||||||||||||||| ||||| ||||    
T  2528898 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttaattataacttc 2528954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 6683 - 6738
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||    
T  6683 tgtgttttagcaacattcacctcaaagtatatttaacaactttttagttatatctt 6738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 184159 - 184104
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||||| || ||||||||||||||||||||||||||||||    
T  184159 tgtgttttagcaacattcactttaaggtgtatttaacaactttttagttatatctt 184104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 25123712 - 25123658
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatct 435  Q
    ||||||||  |||||||||| | ||||||||||||||||||||||||||||||||    
T  25123712 tgtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatct 25123658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 7089974 - 7090030
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttc 437  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||||||    
T  7089974 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatcttc 7090030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 10777028 - 10776976
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||||| || |||||||||||||||||||||||||||    
T  10777028 tgtgttttagcaacattcactttaaggtgtatttaacaactttttagttatat 10776976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 1201722 - 1201667
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||||| || |||||||| |||||||||||||||||||||    
T  1201722 tgtgttttagcaacattcactttaaggtgtattttacaactttttagttatatctt 1201667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 25123431 - 25123376
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||    
T  25123431 tgtgttttagcaacattcaccttaaagtgtatttaacaattttttagttatatctt 25123376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 26630082 - 26630027
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  26630082 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 26630027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 27545813 - 27545758
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  27545813 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 27545758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 34103053 - 34102998
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  34103053 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 34102998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 35550735 - 35550790
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||||| || |||||||||||||||||||| |||||||||    
T  35550735 tgtgttttagcaacattcactttaaggtgtatttaacaactttttacttatatctt 35550790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 42556735 - 42556680
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  42556735 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 42556680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 9484064 - 9484116
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  9484064 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 9484116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 17691268 - 17691216
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  17691268 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 17691216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 23544936 - 23544992
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttc 437  Q
    ||||||||  |||||||||| | ||  ||||||||||||||||||||||||||||||    
T  23544936 tgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatcttc 23544992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 30207220 - 30207168
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  30207220 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 30207168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 2823745 - 2823800
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | ||  |||||||||||||||||||||||||||||    
T  2823745 tgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctt 2823800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 13468445 - 13468500
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||  | || ||||||||||||||||||||||||||||||    
T  13468445 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatctt 13468500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 26868067 - 26868122
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||| ||||||    
T  26868067 tgtgttttggcaacattcaccttaaggtgtatttaacaactttttagttttatctt 26868122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 32069075 - 32069020
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || || |||||||||||||||||||||||||||    
T  32069075 tgtgttttagcaacattcaccttaaggtttatttaacaactttttagttatatctt 32069020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 34969942 - 34969997
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | ||||||||||||| |||||||| ||||||||||    
T  34969942 tgtgttttagcaacattcaccttaaagtgtatttaataactttttggttatatctt 34969997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 39922418 - 39922473
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| |  | ||||||||||||||||||||||||||||||    
T  39922418 tgtgttttagcaacattcaccttgaggtgtatttaacaactttttagttatatctt 39922473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 44873133 - 44873168
Alignment:
Q  401 ttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44873133 ttcaaagtgtatttaactactttttagttatatctt 44873168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 45299731 - 45299785
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | ||||||||||||||||| |||||||||||||||    
T  45299731 tgtgttttagcaacattcaccttaaagtgtatttaacaac-ttttagttatatctt 45299785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 44874191 - 44874261
Alignment:
Q  296 aaacactctttctaaaatataagtgagtttattctagcaaatgtttgtggaagttgttaacttatacccac 366  Q
    |||||| |||||||||| ||||||| || ||||||||||| ||| ||| | |||||||||| || ||||||    
T  44874191 aaacacactttctaaaaaataagtgggtgtattctagcaattgtctgtaggagttgttaacatacacccac 44874261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 8258475 - 8258520
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||| | || ||||||||||||| ||||||||||||||||    
T  8258475 caacattcaccttaaggtgtatttaacaattttttagttatatctt 8258520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Original strand, 26043110 - 26043139
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  26043110 gtgtatttaacaactttttagttatatctt 26043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Complemental strand, 36899764 - 36899735
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  36899764 gtgtatttaacaactttttagttatatctt 36899735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 3369765 - 3369713
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||| |||||    
T  3369765 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagctatat 3369713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 5946930 - 5946982
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||  ||||||||||| | || || ||||||||||||||||||||||||    
T  5946930 tgtgtttcaacaacattcaccttaaggtttatttaacaactttttagttatat 5946982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 13269378 - 13269430
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||| ||||||    
T  13269378 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttaattatat 13269430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 30633208 - 30633260
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||  | || |||||||||||||||||||||||||||    
T  30633208 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatat 30633260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 4898498 - 4898443
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  4898498 tgtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctt 4898443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 18102830 - 18102885
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | || ||||||||||||||||||||||||||||||    
T  18102830 tgtgttttaacaacattcacattaaggtgtatttaacaactttttagttatatctt 18102885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 14488440 - 14488494
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||| ||||||||||| | || ||||||||||||||||||||||||||||||    
T  14488440 gtgttttaacaacattcaccttaaggtgtatttaacaactttttagttatatctt 14488494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 33730659 - 33730715
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttc 437  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||||||    
T  33730659 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatcttc 33730715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 25061795 - 25061849
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||||| || ||||||||||||||||||||||||||||||    
T  25061795 tgtgttttagcaacattcactt-aaggtgtatttaacaactttttagttatatctt 25061849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 9406733 - 9406793
Alignment:
Q  390 acaacattcacttcaaagtgtatttaacaactttttagttatatcttcttaaaatactcct 450  Q
    ||||||| ||| |||||||||||||| |||||||||||||||| |||  ||||| ||||||    
T  9406733 acaacatgcacctcaaagtgtatttatcaactttttagttataacttgctaaaacactcct 9406793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 4838422 - 4838477
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||  | || ||||||||||||||||||||||||||||||    
T  4838422 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatctt 4838477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 436
Target Start/End: Original strand, 11742490 - 11742518
Alignment:
Q  408 tgtatttaacaactttttagttatatctt 436  Q
    |||||||||||||||||||||||||||||    
T  11742490 tgtatttaacaactttttagttatatctt 11742518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 102312 - 102257
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | || ||||||||||||||||||||||||||||||    
T  102312 tgtgttttaacaacattcaccttaatgtgtatttaacaactttttagttatatctt 102257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 33106058 - 33106110
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | ||||||||||||||||||||||||||||||    
T  33106058 tgtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatat 33106110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 38425624 - 38425572
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||| ||||||||||| | || |||||||||||||||||||||||||||    
T  38425624 tgtgttttaacaacattcaccttaaggtgtatttaacaactttttagttatat 38425572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 15725325 - 15725380
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | ||  |||||||||||||||||||||||||||||    
T  15725325 tgtgttttaacaacattcaccttaagatgtatttaacaactttttagttatatctt 15725380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 23383991 - 23383936
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  23383991 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 23383936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 26335887 - 26335942
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||||| || ||||||||||||| ||||||||||||||||    
T  26335887 tgtgttttagcaacattcactttaaggtgtatttaacaattttttagttatatctt 26335942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 38425717 - 38425662
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | || |||||||||||||||||| |||||||||||    
T  38425717 tgtgttttaacaacattcaccttaaggtgtatttaacaacttttcagttatatctt 38425662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 49425825 - 49425770
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  49425825 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 49425770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 6193019 - 6192965
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  6193019 gtgttttagcaacattcacattaaggtgtatttaacaactttttagttatatctt 6192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 142775 - 142820
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||| | || ||||||||||||||||||||||||||||||    
T  142775 caacattcacattaaggtgtatttaacaactttttagttatatctt 142820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 11777562 - 11777510
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttata 432  Q
    |||||||||  |||||||||| | || ||||||||||||||||||||||||||    
T  11777562 atgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttata 11777510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 52306914 - 52306966
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  52306914 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 52306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 40496207 - 40496152
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || || |||||||||||||||||||||||||||    
T  40496207 tgtgttttagcaacattcaccttaaggtatatttaacaactttttagttatatctt 40496152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 45875905 - 45875960
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||| ||||||||||||||||    
T  45875905 tgtgttttagcaacattcaccttaaggtgtatttaacaattttttagttatatctt 45875960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 46106820 - 46106875
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||| ||||||||||||||||    
T  46106820 tgtgttttagcaacattcaccttaaggtgtatttaacaattttttagttatatctt 46106875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 13211595 - 13211553
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||||| | || |||||||||||||||||||||||||||    
T  13211595 caacattcacctaaaggtgtatttaacaactttttagttatat 13211553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 14948269 - 14948323
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | ||  |||||||||||||||||||||||||||||    
T  14948269 gtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctt 14948323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 20458896 - 20458842
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||| ||||||||||| | || ||||||||||||||||||||  ||||||||    
T  20458896 gtgttttaacaacattcaccttaaggtgtatttaacaactttttaactatatctt 20458842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 36955503 - 36955557
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | ||||| |||||||||| ||||||||||||||||    
T  36955503 gtgttttagcaacattcaccttaaagtatatttaacaattttttagttatatctt 36955557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 4712814 - 4712859
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||||| || ||||||||||||| ||| ||||||||||||    
T  4712814 caacattcactttaaggtgtatttaacaaatttctagttatatctt 4712859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 9744187 - 9744142
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||| | || |||||| |||||||||||||||||||||||    
T  9744187 caacattcaccttaaggtgtatctaacaactttttagttatatctt 9744142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Original strand, 49606168 - 49606197
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  49606168 gtgtatttaacaactttttagttatatctt 49606197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 436
Target Start/End: Original strand, 6946813 - 6946841
Alignment:
Q  408 tgtatttaacaactttttagttatatctt 436  Q
    |||||||||||||||||||||||||||||    
T  6946813 tgtatttaacaactttttagttatatctt 6946841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 16553571 - 16553623
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | ||  ||||||||||||||||||||||||||    
T  16553571 tgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatat 16553623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 13071752 - 13071631
Alignment:
Q  235 tatttcagcaacatgcatcttttgatgtatttagtcgctttttaattatgatgacatgccaaaacactctttctaaaatataagtgagtttattctagca 334  Q
    ||||| |||||||||| || || | |||| |||||| ||||||| ||||||   ||||| ||||||||| |||||||| ||||| |    ||||||||||    
T  13071752 tattttagcaacatgcgtcattgggtgtacttagtcactttttagttatga---catgctaaaacactcattctaaaaaataagagg---tattctagca 13071659  T
Q  335 aatgtttgtggaagttgttaacttatac 362  Q
    |||| |||||||||||| ||||||||||    
T  13071658 aatgcttgtggaagttgctaacttatac 13071631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 28704494 - 28704549
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | || ||||||||||||||||||||||||||||||    
T  28704494 tgtgttttaacaacattcaccttaaggtgtatttaacaactttttagttatatctt 28704549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 13157331 - 13157277
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  13157331 gtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctt 13157277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 10558264 - 10558208
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  10558264 atgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 10558208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 51431991 - 51432047
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttc 437  Q
    ||||||||  ||||||| || | ||||||||||||||||||||||||||||||||||    
T  51431991 tgtgttttagcaacattaaccttaaagtgtatttaacaactttttagttatatcttc 51432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 10764743 - 10764798
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  10764743 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 10764798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 16073489 - 16073434
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  16073489 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 16073434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 20201751 - 20201696
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  20201751 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 20201696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 9005310 - 9005191
Alignment:
Q  241 agcaacatgcatcttttgatgtatttagtcgctttttaattatgatgacatgccaaaacactctttctaaaatataagtgagtttattctagcaaatgtt 340  Q
    |||||||||||||||| |||||||||||   ||| ||| ||   ||||||||| |||||||   |||||||| ||||||  || |||| ||||||||| |    
T  9005310 agcaacatgcatctttggatgtatttagctacttcttagtt---atgacatgctaaaacac---ttctaaaaaataagtaggtgtattttagcaaatgat 9005217  T
Q  341 tgtggaagttgttaacttatacccac 366  Q
    ||||| ||||| ||||||| ||||||    
T  9005216 tgtgggagttgctaacttacacccac 9005191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 34515177 - 34515124
Alignment:
Q  384 gtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttc 437  Q
    ||||| ||||||||||| | || |||||||| ||||||||||||||||||||||    
T  34515177 gttttaacaacattcaccttaaggtgtattttacaactttttagttatatcttc 34515124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 50559301 - 50559248
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatc 434  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||    
T  50559301 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatc 50559248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 463058 - 463014
Alignment:
Q  392 aacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||| | || ||||||||||||||||||||||||||||||    
T  463058 aacattcaccttaaggtgtatttaacaactttttagttatatctt 463014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 14387307 - 14387251
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||  |||||||||| | || ||||||| ||||||||||||||||||||||    
T  14387307 atgtgttttagcaacattcaccttaaggtgtattcaacaactttttagttatatctt 14387251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 158465 - 158410
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||| ||||||    
T  158465 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttttatctt 158410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 26843049 - 26842994
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  ||| |||||| | || ||||||||||||||||||||||||||||||    
T  26843049 tgtgttttagcaatattcaccttaaggtgtatttaacaactttttagttatatctt 26842994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 28764600 - 28764545
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||| ||||||||||||||||    
T  28764600 tgtgttttagcaacattcacattaaggtgtatttaacaattttttagttatatctt 28764545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 33676158 - 33676213
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | || |||||||||||||||| ||| |||||||||    
T  33676158 tgtgttttaacaacattcaccttaaggtgtatttaacaacttattaattatatctt 33676213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 36389510 - 36389455
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | ||  |||||||||||||||||||||||||||||    
T  36389510 tgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctt 36389455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 3978014 - 3977968
Alignment:
Q  390 acaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||  | || ||||||||||||||||||||||||||||||    
T  3978014 acaacattcatcttaaggtgtatttaacaactttttagttatatctt 3977968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 28182180 - 28182254
Alignment:
Q  285 atgacatgccaaaacactctttctaaaatataagtgagtttattctagcaaatgtttgtggaagttgttaactta 359  Q
    ||||||||  ||||||||||||| |||| ||||||  || |||| ||||||||| |||||| ||||| |||||||    
T  28182180 atgacatgttaaaacactctttcaaaaaaataagttggtgtattttagcaaatgcttgtgggagttgctaactta 28182254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Complemental strand, 6192449 - 6192420
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  6192449 gtgtatttaacaactttttagttatatctt 6192420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Original strand, 16005735 - 16005764
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  16005735 gtgtatttaacaactttttagttatatctt 16005764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 42199996 - 42200049
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||||  ||||||| |||| || |||||||||||||||||||| ||||||    
T  42199996 atgtgttttagcaacatttactttaaggtgtatttaacaactttttacttatat 42200049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 42208864 - 42208917
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||||  ||||||| |||| || |||||||||||||||||||| ||||||    
T  42208864 atgtgttttagcaacatttactttaaggtgtatttaacaactttttacttatat 42208917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 13157608 - 13157556
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||| ||||||    
T  13157608 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttaattatat 13157556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 23413779 - 23413831
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || ||||||||||||| |||||||||||||    
T  23413779 tgtgttttagcaacattcaccttaaggtgtatttaacaattttttagttatat 23413831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 436
Target Start/End: Original strand, 28454876 - 28454904
Alignment:
Q  408 tgtatttaacaactttttagttatatctt 436  Q
    |||||||||||||||||||||||||||||    
T  28454876 tgtatttaacaactttttagttatatctt 28454904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 32994236 - 32994184
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || ||||| |||||||||||||||||||||    
T  32994236 tgtgttttagcaacattcaccttaaggtgtacttaacaactttttagttatat 32994184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 41146394 - 41146446
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||| ||||||||||| | || ||||||||| |||| ||||||||||||    
T  41146394 tgtgttttaacaacattcaccttaaggtgtatttagcaaccttttagttatat 41146446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 45818925 - 45818977
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||| ||||||||||||    
T  45818925 tgtgttttagcaacattcaccttaaggtgtatttaacaacattttagttatat 45818977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 8386746 - 8386692
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  8386746 gtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctt 8386692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 23387271 - 23387326
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| |||| |||||| | || ||||||||||||||||||||||||||||||    
T  23387271 tgtgttttaacaagattcaccttaaggtgtatttaacaactttttagttatatctt 23387326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 29512016 - 29511961
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||||| ||  |||||||||||||||||||||||||||||    
T  29512016 tgtgttttagcaacattcactttaagatgtatttaacaactttttagttatatctt 29511961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 33739597 - 33739542
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  33739597 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 33739542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 34082617 - 34082562
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  34082617 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 34082562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 43660816 - 43660886
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatc-ttcttaaaatactcctcctataaaac 460  Q
    |||||| ||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||||| || |||||    
T  43660816 caacatgcacctcaaggtgtatttaaccactttttagttatatctttcctaaaatactcctcataaaaaac 43660886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 16513225 - 16513270
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||| | || ||||||||||||||||||||||||||||||    
T  16513225 caacattcaccttaaggtgtatttaacaactttttagttatatctt 16513270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 1750332 - 1750384
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  1750332 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 1750384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 1576703 - 1576648
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||| ||||||||||||||||||||||    
T  1576703 tgtgttttatcaacattcaccttaaggtgtattcaacaactttttagttatatctt 1576648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 11675202 - 11675147
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  ||| |||||| | || ||||||||||||||||||||||||||||||    
T  11675202 tgtgttttagcaatattcaccttaaggtgtatttaacaactttttagttatatctt 11675147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 23664798 - 23664743
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||| | ||| |||||||||||| |||||| |||||||||    
T  23664798 tgtgttttaacaacattcaccttaaaatgtatttaacaattttttaattatatctt 23664743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 45629787 - 45629732
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||  | || ||||||||||||||||||||||||||||||    
T  45629787 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatctt 45629732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 13002167 - 13002221
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | |  ||||||||||||||||||||||||||||||    
T  13002167 gtgttttagcaacattcaccttagggtgtatttaacaactttttagttatatctt 13002221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 37169606 - 37169552
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||| ||| | || ||||||||||||||||||||||||||||||    
T  37169606 gtgttttagcaacatccaccttaaggtgtatttaacaactttttagttatatctt 37169552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 42850065 - 42850011
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | ||  |||||||||||||||||||||||||||||    
T  42850065 gtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctt 42850011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 17605606 - 17605662
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||| | ||||||||| | || ||||||||||||||||||||||||||||||    
T  17605606 atgtgttttaaaaacattcaccttaaggtgtatttaacaactttttagttatatctt 17605662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 12127675 - 12127730
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  12127675 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 12127730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 13349269 - 13349324
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  13349269 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 13349324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 22894605 - 22894550
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||||| || ||||||||||||| ||||||||||||||||    
T  22894605 tgtgttttagcaacattcactttaaggtgtatttaacaattttttagttatatctt 22894550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 27360129 - 27360184
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||||  || |||||||||| |||||||||||||||||||    
T  27360129 tgtgttttaacaacattcactctaaggtgtatttaataactttttagttatatctt 27360184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 50913059 - 50913006
Alignment:
Q  380 atgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  50913059 atgtgttttatcaacattcaccttaaggtgtatttaacaactttttagttatat 50913006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 53581693 - 53581745
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  53581693 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 53581745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 54244755 - 54244807
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||| | || |||||||||||||||||||||||||||    
T  54244755 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 54244807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 1376055 - 1376000
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||| ||||||||||||||||    
T  1376055 tgtgttttagcaacattcaccttaaggtgtatttaacaattttttagttatatctt 1376000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 3269504 - 3269559
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || |||||||||||||||||||| |||||||||    
T  3269504 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttaattatatctt 3269559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 33837867 - 33837812
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | ||  |||||||||||||||||||||||||||||    
T  33837867 tgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctt 33837812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 36824089 - 36824144
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| ||||||||||  | || |||||||||||||||||||| |||||||||    
T  36824089 tgtgttttaacaacattcatcttaaggtgtatttaacaactttttaattatatctt 36824144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 50801708 - 50801763
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||  | || ||||||||||||||||||||||||||||||    
T  50801708 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatctt 50801763  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 50874172 - 50874117
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||  | || ||||||||||||||||||||||||||||||    
T  50874172 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatctt 50874117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 53467409 - 53467354
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||| ||| | || ||||||||||||||||||||||||||||||    
T  53467409 tgtgttttagcaacatccaccttaaggtgtatttaacaactttttagttatatctt 53467354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 29239651 - 29239597
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||  |||||||||| | || |||||||||||| |||||||||||||||||    
T  29239651 gtgttttagcaacattcaccttaaggtgtatttaacagctttttagttatatctt 29239597  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 437
Target Start/End: Original strand, 30685202 - 30685231
Alignment:
Q  408 tgtatttaacaactttttagttatatcttc 437  Q
    ||||||||||||||||||||||||||||||    
T  30685202 tgtatttaacaactttttagttatatcttc 30685231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 48765258 - 48765213
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||| | ||  |||||||||||||||||||||||||||||    
T  48765258 caacattcaccttaagatgtatttaacaactttttagttatatctt 48765213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 459
Target Start/End: Complemental strand, 22894927 - 22894875
Alignment:
Q  407 gtgtatttaacaactttttagttatatcttcttaaaatactcctcctataaaa 459  Q
    ||||||||||| |||||||||||||| ||| |||||| || ||| ||||||||    
T  22894927 gtgtatttaactactttttagttataacttgttaaaacacaccttctataaaa 22894875  T

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Target: scaffold0627 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 4203 - 4258
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  4203 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 4258  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 939040 - 939095
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  939040 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 939095  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 19069541 - 19069596
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  19069541 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 19069596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 28912227 - 28912282
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||||||||||||||||||||    
T  28912227 tgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctt 28912282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 454249 - 454301
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    |||||||| ||||||||||  | || |||||||||||||||||||||||||||    
T  454249 tgtgttttaacaacattcatcttaaggtgtatttaacaactttttagttatat 454301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 18352366 - 18352310
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatcttc 437  Q
    ||||||||  |||||||||  | || |||||||||||||||||||||||||||||||    
T  18352366 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatcttc 18352310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 2509372 - 2509317
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | ||  |||||||||||||||||||||||||||||    
T  2509372 tgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctt 2509317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 6559499 - 6559554
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||||||||| ||||||||||||||||    
T  6559499 tgtgttttagcaacattcaccttaaggtgtatttaacaattttttagttatatctt 6559554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 9401695 - 9401652
Alignment:
Q  393 acattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||| | || ||||||||||||||||||||||||||||||    
T  9401695 acattcaccttaaggtgtatttaacaactttttagttatatctt 9401652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 11766266 - 11766321
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || |||||||||||||||||||| |||||||||    
T  11766266 tgtgttttagcaacattcacattaaggtgtatttaacaactttttaattatatctt 11766321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 15957265 - 15957210
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||| ||||| | || ||||||||||||||||||||||||||||||    
T  15957265 tgtgttttagcaacgttcaccttaaggtgtatttaacaactttttagttatatctt 15957210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 25818630 - 25818685
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || ||||||| ||||||||||||||||||||||    
T  25818630 tgtgttttagcaacattcaccttaaggtgtattaaacaactttttagttatatctt 25818685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 23740185 - 23740239
Alignment:
Q  382 gtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||| |||| |||||| | || ||||||||||||| ||||||||||||||||    
T  23740185 gtgttttaacaatattcaccttaaggtgtatttaacaattttttagttatatctt 23740239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 2362905 - 2362950
Alignment:
Q  391 caacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    |||||||||| | || ||||||||||||| ||||||||||||||||    
T  2362905 caacattcaccttaaggtgtatttaacaattttttagttatatctt 2362950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Complemental strand, 38796848 - 38796819
Alignment:
Q  407 gtgtatttaacaactttttagttatatctt 436  Q
    ||||||||||||||||||||||||||||||    
T  38796848 gtgtatttaacaactttttagttatatctt 38796819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1717 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1717
Description:

Target: scaffold1717; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 1408 - 1376
Alignment:
Q  405 aagtgtatttaacaactttttagttatatcttc 437  Q
    |||||||||||||||||||||||||||||||||    
T  1408 aagtgtatttaacaactttttagttatatcttc 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1527 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1527
Description:

Target: scaffold1527; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 1654 - 1622
Alignment:
Q  405 aagtgtatttaacaactttttagttatatcttc 437  Q
    |||||||||||||||||||||||||||||||||    
T  1654 aagtgtatttaacaactttttagttatatcttc 1622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 5827 - 5882
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| | || || |||||||||||||||||||||||||||    
T  5827 tgtgttttagcaacattcaccttaaggtatatttaacaactttttagttatatctt 5882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 9784 - 9729
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatatctt 436  Q
    ||||||||  |||||||||| |  | ||||||||||||||||||||||||||||||    
T  9784 tgtgttttagcaacattcaccttgaggtgtatttaacaactttttagttatatctt 9729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 20671 - 20619
Alignment:
Q  381 tgtgtttttacaacattcacttcaaagtgtatttaacaactttttagttatat 433  Q
    ||||||||  |||||||||  | || |||||||||||||||||||||||||||    
T  20671 tgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatat 20619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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