View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_51 (Length: 235)
Name: NF14492_low_51
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 5064315 - 5064507
Alignment:
| Q |
29 |
aacaatgaaaaaatactagtactaatgtctttagattcttagaatgaggtattctataatgatttataaaacatacaataggaagaaaacccaaaattaa |
128 |
Q |
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| T |
5064315 |
aacaatgaaaaaatactagtactaatgtctttagattcttagaatgaggtattctataatgatttataaaacatacaataggaagaaaacacaaaattaa |
5064414 |
T |
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| Q |
129 |
aagtaactataattagcagttactataattttctacagtattagctaaactaattacaacgtacgtttccctagcttagcaaaacgtatatat |
221 |
Q |
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| T |
5064415 |
aagtaactataattagcagttactataattttctacagtattagctaaactaattacaacgtacgtttccctagcttagcaaaacgtatatat |
5064507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5064249 - 5064292
Alignment:
| Q |
1 |
tacatgaaaaatgaagaaaacaaacttcaacaatgaaaaaatac |
44 |
Q |
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| T |
5064249 |
tacatgaaaaatgaagaaaacaaacttcaacaatgaaaaaatac |
5064292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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