View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_low_52 (Length: 234)

Name: NF14492_low_52
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_low_52
NF14492_low_52
[»] chr1 (7 HSPs)
chr1 (1-220)||(37189677-37189893)
chr1 (32-142)||(38859919-38860029)
chr1 (42-140)||(47022780-47022878)
chr1 (21-140)||(10155968-10156087)
chr1 (42-140)||(42517246-42517344)
chr1 (32-81)||(48392417-48392466)
chr1 (32-140)||(49902536-49902644)
[»] chr8 (5 HSPs)
chr8 (21-140)||(42072485-42072604)
chr8 (32-140)||(35806862-35806970)
chr8 (32-81)||(16591386-16591435)
chr8 (32-80)||(16523174-16523222)
chr8 (32-80)||(43282863-43282911)
[»] chr5 (8 HSPs)
chr5 (43-142)||(8456913-8457012)
chr5 (32-80)||(10081213-10081261)
chr5 (32-140)||(6257362-6257470)
chr5 (32-79)||(11856363-11856410)
chr5 (21-80)||(9737993-9738054)
chr5 (43-81)||(29491425-29491463)
chr5 (21-79)||(42119679-42119737)
chr5 (32-81)||(614403-614452)
[»] chr4 (9 HSPs)
chr4 (43-142)||(17888500-17888599)
chr4 (32-142)||(31377458-31377567)
chr4 (21-140)||(16338165-16338284)
chr4 (32-81)||(11054524-11054573)
chr4 (32-81)||(37801275-37801324)
chr4 (33-81)||(36851398-36851446)
chr4 (32-140)||(1535839-1535947)
chr4 (32-79)||(52632586-52632633)
chr4 (32-81)||(47084080-47084129)
[»] chr2 (8 HSPs)
chr2 (21-142)||(3956629-3956750)
chr2 (32-80)||(6318470-6318518)
chr2 (32-140)||(42769710-42769818)
chr2 (21-140)||(29846499-29846618)
chr2 (42-79)||(2888119-2888156)
chr2 (21-81)||(41674717-41674777)
chr2 (21-80)||(33009730-33009789)
chr2 (32-81)||(40277299-40277348)
[»] scaffold0079 (1 HSPs)
scaffold0079 (21-140)||(54576-54695)
[»] chr3 (8 HSPs)
chr3 (32-80)||(3178771-3178819)
chr3 (21-80)||(13856156-13856215)
chr3 (42-145)||(44994915-44995018)
chr3 (32-81)||(10839391-10839440)
chr3 (32-140)||(8950456-8950564)
chr3 (32-79)||(20382587-20382634)
chr3 (21-79)||(19649385-19649443)
chr3 (32-81)||(6280370-6280419)
[»] scaffold0045 (1 HSPs)
scaffold0045 (26-81)||(34463-34518)
[»] chr7 (6 HSPs)
chr7 (32-140)||(44164695-44164803)
chr7 (21-81)||(19334571-19334631)
chr7 (32-140)||(34259586-34259694)
chr7 (32-140)||(34707184-34707292)
chr7 (42-140)||(29238095-29238193)
chr7 (43-80)||(33057669-33057706)
[»] chr6 (2 HSPs)
chr6 (32-140)||(9231806-9231914)
chr6 (32-81)||(14309809-14309858)
[»] scaffold0086 (1 HSPs)
scaffold0086 (21-81)||(20842-20902)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37189677 - 37189893
Alignment:
Q  1 ccaggtgattgaataagtctaaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagt 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||    
T  37189677 ccaggtgattgaataagtctaaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcaaaaat-ttgggccggagt 37189775  T
Q  101 ccaagcgaatgcctggggtcgcctggccatagaaccgcccatagagcacttgacaacatggttcaaatttaaaatacattttaaatttgtgttattttct 200  Q
    ||  ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37189776 ccgggcgaatgcctggg-tcac-tggccatagaaccgcccatagagcacttgacaacatggttcaaatttaaaatacattttaaatttgtgttatttttt 37189873  T
Q  201 tcgagggattttaaatttgt 220  Q
    ||||||||||||||||||||    
T  37189874 tcgagggattttaaatttgt 37189893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 38859919 - 38860029
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| ||||||||||  |||||||||||||||||        ||||||||||| ||  |||| |||| ||||||||| |||||||    
T  38859919 tttataggggtttatataagaaattcataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccata 38860018  T
Q  132 gaaccgcccat 142  Q
    |||||||||||    
T  38860019 gaaccgcccat 38860029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 47022780 - 47022878
Alignment:
Q  42 tttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgccc 140  Q
    ||||||||| ||||||||||||||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||||| |||| |||||||||||    
T  47022780 tttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 47022878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 10156087 - 10155968
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 120  Q
    |||| ||||| ||||||||  ||||||||| ||||||||||  ||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  10156087 aaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtc 10155988  T
Q  121 gcctggccatagaaccgccc 140  Q
    ||| |||| |||||||||||    
T  10155987 gccgggccttagaaccgccc 10155968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 42517344 - 42517246
Alignment:
Q  42 tttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgccc 140  Q
    ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||||| |||| |||||||||||    
T  42517344 tttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 42517246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 48392466 - 48392417
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||| ||||||||||| |||||||||| |||||||| ||||||||||    
T  48392466 tttatagggatttatataagaaattcatagggatttacacaagaaattgc 48392417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 49902536 - 49902644
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| || ||||| |||| || |||||| | || ||    
T  49902536 tttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtgcccggagtcgccggacctta 49902635  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  49902636 gaaccgccc 49902644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 42072485 - 42072604
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 120  Q
    |||| ||||| ||||||| | ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  42072485 aaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtc 42072584  T
Q  121 gcctggccatagaaccgccc 140  Q
    ||| ||||||||||||||||    
T  42072585 gccgggccatagaaccgccc 42072604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 35806862 - 35806970
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| ||||||||||||||||||| ||||||||||       |||| |||||| ||   ||| |||| ||||||||| |||| ||    
T  35806862 tttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggcctta 35806961  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  35806962 gaaccgccc 35806970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 16591435 - 16591386
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||| ||||||||||| |||||| |||| ||||||||||||||||||    
T  16591435 tttatagtgatttatataagaaattcttagaaatttacataagaaattgc 16591386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 16523174 - 16523222
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattg 80  Q
    ||||||| ||||||||||| |||||||||| |||||||||| |||||||    
T  16523174 tttatagggatttatataagaaattcatagggatttacatatgaaattg 16523222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 43282911 - 43282863
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattg 80  Q
    ||||||| ||||||||||||||||||| |   |||||||||||||||||    
T  43282911 tttatagggatttatataataaattcagaagaatttacataagaaattg 43282863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 8457012 - 8456913
Alignment:
Q  43 ttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgcccat 142  Q
    |||||||| |||||||||| ||||||||||||||||||        ||||||||||| ||  |||| ||| |||||||||| ||||||||||||||||||    
T  8457012 ttatataagaaattcatagggatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgcccat 8456913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 10081213 - 10081261
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattg 80  Q
    ||||||| | ||||||||| |||||||||| ||||||||||||||||||    
T  10081213 tttataggggtttatataagaaattcatagggatttacataagaaattg 10081261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 6257470 - 6257362
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||| ||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||||| |||| ||    
T  6257470 tttataggggtttgtataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggcctta 6257371  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  6257370 gaaccgccc 6257362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 11856363 - 11856410
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaatt 79  Q
    ||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  11856363 tttatagtgatttatataagaaattcagagcgatttacataagaaatt 11856410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 9738054 - 9737993
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagaga--tttacataagaaattg 80  Q
    |||| ||||| ||||||| ||||||||||| |||||||||| ||  ||||||||||||||||    
T  9738054 aaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaattg 9737993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 29491463 - 29491425
Alignment:
Q  43 ttatataataaattcatagagatttacataagaaattgc 81  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  29491463 ttatataagaaattcatagaaatttacataagaaattgc 29491425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 42119679 - 42119737
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaatt 79  Q
    |||| ||||| ||||||||| ||||||||| ||||||| ||  ||||||||||||||||    
T  42119679 aaattgtccaatttatagaggtttatataagaaattcagaggaatttacataagaaatt 42119737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 614452 - 614403
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||| ||||||||||| ||||||| ||  ||||||||||||||||||    
T  614452 tttatagggatttatataaaaaattcagaggaatttacataagaaattgc 614403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 17888599 - 17888500
Alignment:
Q  43 ttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgcccat 142  Q
    |||||||| ||||||||||  |||||||||||||||||        ||||||||||| ||  |||| |||| ||||||||||||||||||||||||||||    
T  17888599 ttatataagaaattcataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgcccat 17888500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 31377458 - 31377567
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    |||||||||  |||||||| |||||||||| ||||||||||||||||||        ||||||||||| ||  |||| |||| ||||||||| |||||||    
T  31377458 tttatagagggttatataagaaattcatagggatttacataagaaattg-aaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccata 31377556  T
Q  132 gaaccgcccat 142  Q
    |||||||||||    
T  31377557 gaaccgcccat 31377567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 16338284 - 16338165
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 120  Q
    |||| ||||| ||||||| ||||||||||| ||||||||||  ||||||| || |||||||       |||| ||||| |||  ||||||||| ||||||    
T  16338284 aaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtc 16338185  T
Q  121 gcctggccatagaaccgccc 140  Q
    ||| |||| |||||||||||    
T  16338184 gccgggccttagaaccgccc 16338165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 11054524 - 11054573
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  11054524 tttatagaggtttatataagaaattcatagggatttacataagaaattgc 11054573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 37801324 - 37801275
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||| ||||||||||| ||||||||||| ||||||| ||||||||||    
T  37801324 tttatagggatttatataaaaaattcatagaaatttacacaagaaattgc 37801275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 36851446 - 36851398
Alignment:
Q  33 ttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    |||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgc 36851398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 1535839 - 1535947
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| ||||  |||||||| |||| ||    
T  1535839 tttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgccccgggtcgccgggcctta 1535938  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  1535939 gaaccgccc 1535947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 52632586 - 52632633
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaatt 79  Q
    ||||||| ||||||||||| |||||||||| |||||||| ||||||||    
T  52632586 tttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 47084080 - 47084129
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||| | ||||||||| ||||||| ||| ||||||||||||||||||    
T  47084080 tttataggggtttatataagaaattcagagaaatttacataagaaattgc 47084129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 3956629 - 3956750
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 120  Q
    |||| ||||| |||| || | |||||||||||||||||||| ||||||||||| ||||||        ||||||||||| ||  |||| |||| ||||||    
T  3956629 aaattgtccaatttacaggggtttatataataaattcatagggatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcccggggtc 3956728  T
Q  121 gcctggccatagaaccgcccat 142  Q
     || ||||||||||||||||||    
T  3956729 accgggccatagaaccgcccat 3956750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 6318518 - 6318470
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattg 80  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  6318518 tttatagggatttatataagaaattcatagggatttacataagaaattg 6318470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 42769818 - 42769710
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||||| |||| ||    
T  42769818 tttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggcctta 42769719  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  42769718 gaaccgccc 42769710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 29846499 - 29846618
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 120  Q
    |||| ||||| ||||||| | ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  29846499 aaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtc 29846598  T
Q  121 gcctggccatagaaccgccc 140  Q
    | | |||| |||||||||||    
T  29846599 gtcgggccttagaaccgccc 29846618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 2888119 - 2888156
Alignment:
Q  42 tttatataataaattcatagagatttacataagaaatt 79  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2888119 tttatataaaaaattcatagagatttacataagaaatt 2888156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 41674777 - 41674717
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    |||| ||||| ||||||  | ||||||||| ||||||| ||||||||||||||||||||||    
T  41674777 aaattgtccaatttataagggtttatataaaaaattcagagagatttacataagaaattgc 41674717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 33009730 - 33009789
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattg 80  Q
    |||| ||||| ||||||  ||||||||||| |||||||||| |||||| |||||||||||    
T  33009730 aaattgtccaatttataaggatttatataacaaattcatagggatttatataagaaattg 33009789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 40277348 - 40277299
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||| ||||||||||| ||||| |||| ||||||||||| |||||||    
T  40277348 tttatagggatttatataagaaatttatagggatttacataaaaaattgc 40277299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 54576 - 54695
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 120  Q
    |||| ||||| ||||||| ||||||||||| ||||||||||  ||||||| || |||||||       |||| ||||| |||  ||||||||| ||||||    
T  54576 aaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtc 54675  T
Q  121 gcctggccatagaaccgccc 140  Q
    ||| |||| |||||||||||    
T  54676 gccgggccttagaaccgccc 54695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 3178771 - 3178819
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattg 80  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  3178771 tttatagagatttatataagaaattcatagggatttacacaagaaattg 3178819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 13856156 - 13856215
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattg 80  Q
    |||| ||||| ||||||| ||||||||||| |||||||||| |||||||| |||||||||    
T  13856156 aaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 13856215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 44995018 - 44994915
Alignment:
Q  42 tttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgccca 141  Q
    ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| || ||||| | || ||||||||| |||| |||||||||||     
T  44995018 tttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtacccggggtcgccgggccttagaaccgcccc 44994919  T
Q  142 taga 145  Q
    ||||    
T  44994918 taga 44994915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 10839440 - 10839391
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||||| ||||||||| ||||||| ||| ||||||||||||||||||    
T  10839440 tttatagaggtttatataagaaattcagagaaatttacataagaaattgc 10839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 8950564 - 8950456
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| ||||||||||| ||||||||||  ||||||| ||||||||||       |||| || ||| ||  |||| |||| ||||||||| |||| ||    
T  8950564 tttatagggatttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccagagcccgggcgagtgcccggggtcgccaggcctta 8950465  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  8950464 gaaccgccc 8950456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 20382587 - 20382634
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaatt 79  Q
    ||||||| | ||||||||| |||||||||| |||||||||||||||||    
T  20382587 tttataggggtttatataagaaattcatagggatttacataagaaatt 20382634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 19649443 - 19649385
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaatt 79  Q
    |||| ||||| ||||||  | ||||||||| |||||||||| |||||||||||||||||    
T  19649443 aaattgtccaatttataagggtttatataagaaattcatagcgatttacataagaaatt 19649385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 6280419 - 6280370
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||||| ||||||||| |||||||  || ||||||||||||||||||    
T  6280419 tttatagaggtttatataagaaattcagggaaatttacataagaaattgc 6280370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 34518 - 34463
Alignment:
Q  26 gtccattttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||| |||||||||||||||||||  |||||| || |||||||||||||||||||    
T  34518 gtccaatttatagagatttatataaagaattcagagggatttacataagaaattgc 34463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 44164803 - 44164695
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| ||||||||||| ||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||||| |||| ||    
T  44164803 tttataggggtttatataagaaattcatagaaatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggcctta 44164704  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  44164703 gaaccgccc 44164695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 19334631 - 19334571
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    |||| ||||| ||||||| | ||||||||| ||||||||||  ||||||||||||||||||    
T  19334631 aaattgtccaatttataggggtttatataagaaattcataggtatttacataagaaattgc 19334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 34259586 - 34259694
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| || |||||| |||| ||    
T  34259586 tttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggagtcgccgggcctta 34259685  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  34259686 gaaccgccc 34259694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 34707184 - 34707292
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||||| || | ||    
T  34707184 tttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggtctta 34707283  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  34707284 gaaccgccc 34707292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 29238193 - 29238095
Alignment:
Q  42 tttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgccc 140  Q
    ||||||||| |||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||| ||| |||| |||||||||||    
T  29238193 tttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgccc 29238095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 33057706 - 33057669
Alignment:
Q  43 ttatataataaattcatagagatttacataagaaattg 80  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  33057706 ttatataagaaattcatagggatttacataagaaattg 33057669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 9231914 - 9231806
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccata 131  Q
    ||||||| | ||||||||| ||||||||||||||||||| ||||||||||       |||| |||||| ||  |||| |||| |||||||||  ||| ||    
T  9231914 tttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgagcctta 9231815  T
Q  132 gaaccgccc 140  Q
    |||||||||    
T  9231814 gaaccgccc 9231806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 14309858 - 14309809
Alignment:
Q  32 tttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    ||||||| ||||||||||| |||||||||| |||||||| ||||||||||    
T  14309858 tttatagggatttatataagaaattcatagggatttacacaagaaattgc 14309809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 20902 - 20842
Alignment:
Q  21 aaatagtccattttatagagatttatataataaattcatagagatttacataagaaattgc 81  Q
    |||| ||||| ||||||||| ||||||||| ||||||| ||  ||||||||||||||||||    
T  20902 aaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgc 20842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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