View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14492_low_53 (Length: 230)

Name: NF14492_low_53
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14492_low_53
NF14492_low_53
[»] chr1 (2 HSPs)
chr1 (21-214)||(9629688-9629877)
chr1 (19-64)||(9828124-9828169)
[»] chr3 (1 HSPs)
chr3 (22-64)||(29508522-29508564)
[»] scaffold0044 (1 HSPs)
scaffold0044 (19-62)||(53260-53303)
[»] chr6 (2 HSPs)
chr6 (21-64)||(32978844-32978887)
chr6 (18-64)||(9025450-9025496)
[»] chr4 (1 HSPs)
chr4 (22-64)||(37203324-37203366)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-64)||(241674-241719)
[»] chr7 (2 HSPs)
chr7 (19-64)||(598277-598322)
chr7 (19-64)||(9778574-9778619)
[»] chr2 (1 HSPs)
chr2 (21-66)||(23058387-23058432)
[»] chr8 (1 HSPs)
chr8 (20-64)||(22652057-22652101)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 9629877 - 9629688
Alignment:
Q  21 tgtccgacaccgggacacgtctcgtccaagaagtgtccgtgcttacacagtagtgaagtacattactactgactgtatagtataataactaatcaatgac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  9629877 tgtccgacaccgggacacgtctcgtccaagaagtgtccgtgcttacacagtagtgaagtacattactactg----tatagtataataactaatcaatgac 9629782  T
Q  121 atgcagtacacaaagcatcttttctctactgatcatttctgaaacaccagggatgtatatcataacatcattctggcattgtatgtatttggtg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9629781 atgcagtacacaaagcatcttttctctactgatcatttctgaaacaccagggatgtatatcataacatcattctggcattgtatgtatttggtg 9629688  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9828124 - 9828169
Alignment:
Q  19 cgtgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    ||||||||||||||||||||||||  ||| || |||||||||||||    
T  9828124 cgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgctt 9828169  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 29508522 - 29508564
Alignment:
Q  22 gtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  29508522 gtccgacaccgggacacgtctaatccaagaagtgtccgtgctt 29508564  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 53260 - 53303
Alignment:
Q  19 cgtgtccgacaccgggacacgtctcgtccaagaagtgtccgtgc 62  Q
    |||||||||||||||||||||| |  ||||||||||||||||||    
T  53260 cgtgtccgacaccgggacacgtttaatccaagaagtgtccgtgc 53303  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 32978887 - 32978844
Alignment:
Q  21 tgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    ||||||||||||||||||||||  |||||| |||||||||||||    
T  32978887 tgtccgacaccgggacacgtctaatccaaggagtgtccgtgctt 32978844  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 9025496 - 9025450
Alignment:
Q  18 tcgtgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    |||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  9025496 tcgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 9025450  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 37203324 - 37203366
Alignment:
Q  22 gtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    |||||||||||||||||||||  ||| ||||||||||||||||    
T  37203324 gtccgacaccgggacacgtctaatccgagaagtgtccgtgctt 37203366  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 241674 - 241719
Alignment:
Q  19 cgtgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  241674 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 241719  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 598277 - 598322
Alignment:
Q  19 cgtgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  598277 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 598322  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9778574 - 9778619
Alignment:
Q  19 cgtgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    ||||||||||||||||||||| ||  |||||| |||||||||||||    
T  9778574 cgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgctt 9778619  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 23058432 - 23058387
Alignment:
Q  21 tgtccgacaccgggacacgtctcgtccaagaagtgtccgtgcttac 66  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  23058432 tgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttac 23058387  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 22652057 - 22652101
Alignment:
Q  20 gtgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 64  Q
    |||||||||||||||||||||||  ||| || |||||||||||||    
T  22652057 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgctt 22652101  T

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