View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_56 (Length: 222)
Name: NF14492_low_56
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 5064918 - 5064727
Alignment:
| Q |
18 |
catgcttgttgtgacttatattaaataaattttggtttgaattttacagaacaaagctgaaacaaacagaggtggattgcgagttcttgaaaaaatgttg |
117 |
Q |
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| T |
5064918 |
catgcttgttgtgacttatattaaataaattttggtttgaattttacagaacaaagctgaaacaaacagaggtggattgcgagttcttgaaaaaatgttg |
5064819 |
T |
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| Q |
118 |
tgaaacattaacagacgaaaacaggaggctcaaaaaggagttacaagagctgaagtcattgaaagtagcacaacctttgtacatgcctatgc |
209 |
Q |
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| T |
5064818 |
tgaaacattaacagacgaaaacaggaggctcaaaaaggagttacaagagctgaagtcattgaaagtagcacaacctttgtacatgcctatgc |
5064727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 40300306 - 40300452
Alignment:
| Q |
63 |
acagaacaaagctgaaacaaacagaggtggattgcgagttcttgaaaaaatgttgtgaaacattaacagacgaaaacaggaggctcaaaaaggagttaca |
162 |
Q |
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|||||||||||||||| |||||||| |||||||| |||||| | || ||||||||||||||||||||||| || || |||||||| |||||||| | || |
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| T |
40300306 |
acagaacaaagctgaagcaaacagaagtggattgtgagttcctaaagaaatgttgtgaaacattaacagaagagaataggaggctacaaaaggaggtgca |
40300405 |
T |
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| Q |
163 |
agagctgaagtcattgaaagtagcacaacctttgtacatgcctatgc |
209 |
Q |
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| T |
40300406 |
agaattgaaggcactgaaactagtaaaacccttgtatatgcctatgc |
40300452 |
T |
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