View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_6 (Length: 516)
Name: NF14492_low_6
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 130 - 497
Target Start/End: Original strand, 27295697 - 27296064
Alignment:
| Q |
130 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
229 |
Q |
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| T |
27295697 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
27295796 |
T |
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| Q |
230 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
329 |
Q |
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| T |
27295797 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
27295896 |
T |
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| Q |
330 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
429 |
Q |
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| T |
27295897 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
27295996 |
T |
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| Q |
430 |
tgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttcctagacctccgatg |
497 |
Q |
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| T |
27295997 |
tgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttcctagacctccgatg |
27296064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 384 - 486
Target Start/End: Complemental strand, 14738722 - 14738620
Alignment:
| Q |
384 |
tttacctgccatgttttgattctgacaccattcattgtgttatgcatgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttc |
483 |
Q |
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| T |
14738722 |
tttacctgccatgttttgattctaacaccattcattgagtcgtgtatgttgacatctctgacagtaatgtttgagacacaggctctggtgttatcttttc |
14738623 |
T |
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| Q |
484 |
cta |
486 |
Q |
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||| |
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| T |
14738622 |
cta |
14738620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 14739074 - 14739019
Alignment:
| Q |
137 |
tgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgca |
192 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |
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| T |
14739074 |
tgaaacttgtatgtttgagaataatactccctgtactgaaccagatccaccctgca |
14739019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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