View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14492_low_8 (Length: 501)
Name: NF14492_low_8
Description: NF14492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14492_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 24518348 - 24518092
Alignment:
| Q |
14 |
aatataagacttaaaatagtcccacacaatcccctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
113 |
Q |
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| T |
24518348 |
aatataagacttaaattagtcccacacaatcctctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
24518249 |
T |
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| Q |
114 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccacgtccacaagtgattctctaagct |
213 |
Q |
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| T |
24518248 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccatgtccacaagtgattctctaagct |
24518149 |
T |
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| Q |
214 |
gattcctttctagcacatgcttcaaaccctacacaattcacattcaactcatacaac |
270 |
Q |
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| T |
24518148 |
gattcctttctagcacatgcttcaaaccctacataatttacattcaactcatacaac |
24518092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 344 - 484
Target Start/End: Complemental strand, 24518018 - 24517878
Alignment:
| Q |
344 |
cttgtatcatctaccttgatcatgtaacagaggaagtgttagtcaaccaattttcataatataccaaaaaattgcataaggagagaaccttagcttgcag |
443 |
Q |
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| T |
24518018 |
cttgtatcatctaccttgatcatgtaacagaggaagagttagtcaaccaattttcataatataccaaaaaattccataaggagagaaccttagcttgcag |
24517919 |
T |
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| Q |
444 |
aatatggtagctttgtgattacatatgcatcagaaaattca |
484 |
Q |
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| T |
24517918 |
aatatggtagctttgtgattacatatgcatgagaaacttca |
24517878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 24507314 - 24507177
Alignment:
| Q |
53 |
agaaccaagattcttccacaaatcaattggaagaaaaaa-tggaaactcccatatagagaaaatttcacctactaaaatcaaggaatgagagaaaacaat |
151 |
Q |
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| T |
24507314 |
agaaccaagattcttccacaaatcaattggaaaaaaaaaatggaaactcccatatagagaaaatttcatcaactaaaatcaaggaatgagagaaaac-at |
24507216 |
T |
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| Q |
152 |
aacattttgagcccgcaaaatggtactaaaaactaccac |
190 |
Q |
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| T |
24507215 |
aacattttgagcacgcaaaatagtattaaaaactaccac |
24507177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 24507460 - 24507421
Alignment:
| Q |
17 |
ataagacttaaaatagtcccacacaatcccctcacaagaa |
56 |
Q |
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| T |
24507460 |
ataagagttaaaatagtcctacacaatcccctcacaagaa |
24507421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 24506500 - 24506448
Alignment:
| Q |
217 |
tcctttctagcacatgcttcaaaccctacacaattcacattcaactcatacaa |
269 |
Q |
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| T |
24506500 |
tccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaa |
24506448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 35456091 - 35456014
Alignment:
| Q |
396 |
ttcataatataccaaaaaattgcataaggagagaaccttagcttgcagaatatggtagctttgtgattacatatgcat |
473 |
Q |
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| T |
35456091 |
ttcataacataccaaaaacttgcataaggagataaccttagctagcagaatatggtagctttgtgattacagatgcat |
35456014 |
T |
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