View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14493_high_15 (Length: 436)

Name: NF14493_high_15
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14493_high_15
NF14493_high_15
[»] chr1 (2 HSPs)
chr1 (330-422)||(28536945-28537037)
chr1 (336-422)||(35686850-35686936)
[»] chr4 (2 HSPs)
chr4 (17-166)||(14259884-14260038)
chr4 (16-54)||(14265409-14265447)
[»] chr6 (1 HSPs)
chr6 (330-407)||(7723059-7723136)
[»] chr2 (1 HSPs)
chr2 (17-166)||(22145934-22146086)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 330 - 422
Target Start/End: Complemental strand, 28537037 - 28536945
Alignment:
Q  330 agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat 422  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28537037 agatgaagttatggaaaatacaaatgcaatatgttcaaggaagcatttatgtctttgatcctctatttacattccatacctttatagtataat 28536945  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 35686936 - 35686850
Alignment:
Q  336 agttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat 422  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35686936 agttatggaaaatacaaatgcaatacgtttaaggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat 35686850  T

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Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 14259884 - 14260038
Alignment:
Q  17 gtttttcttggaaagatcaagtaatggaaatgtaa----ttaacaaatttcacaatttcactaaaaaaggttaaaactcatagctaatgtatttaattaa 112  Q
    |||||||||||||||||||||| ||||||| ||||    |||||| |||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||    
T  14259884 gtttttcttggaaagatcaagttatggaaaggtaagtaattaacagatttcacaattttactaacaaaggttaagactcatatctaatgtatttaattaa 14259983  T
Q  113 atccaggga-acccacttttcagaatcacggtaatcataccaagatgttattcaa 166  Q
    || |||||| ||| ||  ||||||||||||||  | |||||||||||||||||||    
T  14259984 attcagggatacctaccgttcagaatcacggtgcttataccaagatgttattcaa 14260038  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 14265409 - 14265447
Alignment:
Q  16 ggtttttcttggaaagatcaagtaatggaaatgtaatta 54  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  14265409 ggtttttcttggaaagatcgagttatggaaatgtaatta 14265447  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 7723136 - 7723059
Alignment:
Q  330 agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccata 407  Q
    ||||||||| ||||||||||  ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  7723136 agatgaagtgatggaaaatatgaatgcaatatgtttaaggaaacatttatgtctttgatcctatatttatattccata 7723059  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 22146086 - 22145934
Alignment:
Q  17 gtttttcttggaaagatcaagtaatggaaatgtaattaacaaatttcacaatttcactaaaaaagg--ttaaaactcatagctaatgtatttaattaaat 114  Q
    ||||| |||||||||||||| | |||| || |||||||||||||||||||| | |  |||||||    |||||||||| ||||||| ||||||  |||||    
T  22146086 gttttccttggaaagatcaaattatggtaaggtaattaacaaatttcacaaatccggtaaaaaaaaaattaaaactcaaagctaatatatttaggtaaat 22145987  T
Q  115 ccaggga-acccacttttcagaatcacggtaatcataccaagatgttattcaa 166  Q
    ||||| | ||| ||| ||||| |||||| |||| |||||||||||||||||||    
T  22145986 ccaggcatacctactattcaggatcacgataattataccaagatgttattcaa 22145934  T

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