View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14493_high_17 (Length: 423)

Name: NF14493_high_17
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14493_high_17
NF14493_high_17
[»] chr5 (3 HSPs)
chr5 (1-405)||(2839308-2839714)
chr5 (1-92)||(20406366-20406456)
chr5 (1-92)||(34987296-34987386)
[»] chr8 (2 HSPs)
chr8 (217-365)||(18297116-18297270)
chr8 (345-395)||(11689539-11689589)
[»] chr7 (4 HSPs)
chr7 (3-92)||(29052879-29052967)
chr7 (1-92)||(46737611-46737701)
chr7 (1-92)||(46370807-46370900)
chr7 (1-92)||(7670258-7670350)
[»] chr3 (4 HSPs)
chr3 (1-92)||(42402886-42402976)
chr3 (3-92)||(4332814-4332902)
chr3 (1-92)||(42372346-42372436)
chr3 (1-92)||(21629033-21629125)
[»] chr1 (6 HSPs)
chr1 (1-92)||(7732248-7732338)
chr1 (1-92)||(37383936-37384026)
chr1 (3-92)||(33206953-33207041)
chr1 (1-92)||(41769960-41770051)
chr1 (1-92)||(4295057-4295150)
chr1 (43-92)||(46392082-46392130)
[»] chr4 (2 HSPs)
chr4 (1-92)||(37081379-37081470)
chr4 (1-92)||(36035659-36035750)
[»] chr6 (1 HSPs)
chr6 (1-92)||(27829423-27829514)
[»] chr2 (2 HSPs)
chr2 (2-77)||(346270-346345)
chr2 (1-92)||(29599765-29599855)
[»] scaffold2013 (1 HSPs)
scaffold2013 (43-92)||(15-63)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 2839714 - 2839308
Alignment:
Q  1 tgatatatattattaaacattatt-ctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaacttnnnnnnn 99  Q
    |||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||           
T  2839714 tgatatatattattaaacattatttctccttccttcaaaaaaacattattctcctttttattcaaaccataacgtaagttgaaaaactaacttaaaaaaa 2839615  T
Q  100 taatagagatgcacaacatttgttatttccatctattgttatgaagtttttt-atgtcaaaagagcaacggcttaacaccatgctctggcaaggaaaaga 198  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  2839614 taatagggatgcacaacatttgttatttccatctattgttatgaagtttttttatgtcaaaagagcaacggctgaacaccatgctctggcaaggaaaaga 2839515  T
Q  199 atggagacaagnnnnnnntcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatgcgct 298  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2839514 atggagacaagaaaaaaatcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatgcgct 2839415  T
Q  299 aaactaatatgctaccaaaaccaataataatgatgcagtagtgcttaattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaagaag 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2839414 aaactaatatgctaccaaaaccaataataatgatgcagtagtgcttaattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaagaag 2839315  T
Q  399 ctgctga 405  Q
    |||||||    
T  2839314 ctgctga 2839308  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 20406456 - 20406366
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  20406456 tgatatatattattaaacattattctccttccttcaaaaaaacattattctccttttttttcaaactataacgtaag-tgaaaaactaactt 20406366  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34987296 - 34987386
Alignment:
Q  1 tgatatatattattaaacattattctccttacttc-nnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||        |||||||||||||||| |||||| ||||||||||  ||||||||||||||    
T  34987296 tgatatatattattaaacattattctccttccttcaaaaaaaacattattctccttttttttcaaa-cataacgtaa-atgaaaaactaactt 34987386  T

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Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 365
Target Start/End: Original strand, 18297116 - 18297270
Alignment:
Q  217 tcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatgcgctaaactaatatgctaccaa 316  Q
    |||||||||||||| ||||||||||| |||||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18297116 tcaatttccaaaaatgaacacacaaatccagtcaatacatacaatttacgtaaaatatgaaagctatcaatataaatgcgctaaactaatatgctaccaa 18297215  T
Q  317 aacca------ataataatgatgcagtagtgcttaattagcaaattggaattgtt 365  Q
    ||| |      ||||||||||||||| ||||||||||||||||||||||||||||    
T  18297216 aacaaataattataataatgatgcaggagtgcttaattagcaaattggaattgtt 18297270  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 11689539 - 11689589
Alignment:
Q  345 aattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaag 395  Q
    ||||| ||||||||| ||| |||||||||||| ||||||||||||||||||    
T  11689539 aattaccaaattggatttgatgtaaatgcgctaactgccaaaattatgaag 11689589  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 29052967 - 29052879
Alignment:
Q  3 atatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||| ||||       |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  29052967 atatatattattaaacattattctccttccttcaaaaaaacattattctccttttttttcaaaccataacgtaag-tgaaaaactaactt 29052879  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 46737701 - 46737611
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||| ||| |||        |||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  46737701 tgatatatattattaaacattattcttcttcctttaaaaaaacattattctccttttctttcaaaccataacgtaag-tgaaaaactaactt 46737611  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 46370900 - 46370807
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcc---tttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||        ||||||||||   ||||| |||||||||||||||||| ||||||||||||||    
T  46370900 tgatatatattattaaacattattctccttccttcaaaaaaaaattattctcctttttttttttcaaaccataacgtaag-tgaaaaactaactt 46370807  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7670350 - 7670258
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcc--tttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    ||||||||||||||||| |||||||||||| ||||       ||||||||| |  ||||| |||||||||||||||||| ||||||| ||||||    
T  7670350 tgatatatattattaaatattattctccttccttcaaaaaaacattattcttcttttttttttcaaaccataacgtaag-tgaaaaattaactt 7670258  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 42402976 - 42402886
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||| ||| ||||       |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  42402976 tgatatatattattaaacattattcttcttccttcaaaaaaacattattctccttttttttcaaaccataacgtaag-tgaaaaactaactt 42402886  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 4332814 - 4332902
Alignment:
Q  3 atatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||| ||||       |||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  4332814 atatatattattaaacattattctccttccttcaaaaaaacattattctctttttttttcaaaccataacgtaag-tgaaaaactaactt 4332902  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 42372436 - 42372346
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||| ||| ||||       |||||||||||||||| ||||||||||||||| || ||||| ||||||||    
T  42372436 tgatatatattattaaacattattcttcttccttcaaaaaaacattattctccttttttttcaaaccataacgt-aggtgaaatactaactt 42372346  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 21629033 - 21629125
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcc--tttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||| | ||| ||||       |||||||||||  ||||| |||||||||||||||||| ||||||||||||||    
T  21629033 tgatatatattattaaacattatttttcttccttcaaaaaaacattattctcctttttttcttcaaaccataacgtaag-tgaaaaactaactt 21629125  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7732338 - 7732248
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  7732338 tgatatatattattaaacattattctccttccttcaaaaaaacattattctccttttttttcaaactataacgtaag-tgaaaaactaactt 7732248  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 37383936 - 37384026
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||       || ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  37383936 tgatatatattattaaacattattctccttccttcaaaaaaacaatattctccttttttttcaaaccataacgtaag-tgaaaaactaactt 37384026  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 33206953 - 33207041
Alignment:
Q  3 atatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    ||||||||||||||||||||||||| || ||||        |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33206953 atatatattattaaacattattctcattccttcaaaaaaatattattctcctttttattcaaaccataacgtaag-tgaaaaactaactt 33207041  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 41769960 - 41770051
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcc-tttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||| ||||| |||||||||| ||||||| ||||||||||||||    
T  41769960 tgatatatattattaaacattattctccttccttcaaaaaaacattattctcctttttttttcaaaccatgacgtaag-tgaaaaactaactt 41770051  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4295150 - 4295057
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctc---ctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||    ||||| |||||||||||||||||| ||||||||||||||    
T  4295150 tgatatatattattaaacattattctccttccttcaaaaaaacattattctctttttttttcttcaaaccataacgtaag-tgaaaaactaactt 4295057  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 46392130 - 46392082
Alignment:
Q  43 cattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  46392130 cattattctccttttttttcaaaccataacgtaag-tgaaaaactaactt 46392082  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 37081379 - 37081470
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcc-tttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  37081379 tgatatatattattaaacattattctccttccttcaaaaaaacattattctcctttttttttcaaaccataacgtaag-tgaaaaactaactt 37081470  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 36035750 - 36035659
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctc-ctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||  ||||| |||||||||||| ||||| ||||||||||||||    
T  36035750 tgatatatattattaaacattattctccttccttcaaaaaaacattattctcttttttttttcaaaccataatgtaag-tgaaaaactaactt 36035659  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27829514 - 27829423
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcc-tttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||| ||||| |||| ||| ||||||||| ||||||||||||||    
T  27829514 tgatatatattattaaacattattctccttacttcaaaaaaacattattctcctttttttttcataccgtaacgtaag-tgaaaaactaactt 27829423  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 346270 - 346345
Alignment:
Q  2 gatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaag 77  Q
    ||||||||||||||||||||||||||||| |||        |||||||||||||||| ||||||||||||||||||    
T  346270 gatatatattattaaacattattctccttccttaaaaaaaacattattctccttttttttcaaaccataacgtaag 346345  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 29599855 - 29599765
Alignment:
Q  1 tgatatatattattaaacattattctccttacttcnnnnnnncattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    ||||||||||||||||| |||||||||||| ||||        ||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  29599855 tgatatatattattaaatattattctccttccttcaaaaaaatattattctccttttttttcaaaccataacgtaa-atgaaaaactaactt 29599765  T

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Target: scaffold2013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 15 - 63
Alignment:
Q  43 cattattctcctttttattcaaaccataacgtaagttgaaaaactaactt 92  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  15 cattattctccttttttttcaaaccataacgtaag-tgaaaaactaactt 63  T

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