View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_high_19 (Length: 414)
Name: NF14493_high_19
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_19 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 43436 - 43061
Alignment:
| Q |
18 |
aaccctgctgccatgacatcagcctcaccaaaacacaaggcaaaaggaagacaacctgctacacacgcagaggacagcggcccctacgagtgacataatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43436 |
aaccctgctgccatgacatcagcctcaccaaaacacaaggcaaaaggaagacaacctgctacacacgcagaggacagcagcccctacgagtgacataatt |
43337 |
T |
|
| Q |
118 |
caaccacaacctaaaccnnnnnnncagcaacaaacatgtg-agtcgacgaacaaacttcgcctcaacaagaattcccgagagctccaacaccattcataa |
216 |
Q |
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||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
43336 |
caaccacaacctaaaccaaaaaaacagcaacaaacacgtgcagtcgacgaacaaacttcgcctcaacaagaattcctgggagctccaacaccattcataa |
43237 |
T |
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| Q |
217 |
aacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccacatagttatctcgttattga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43236 |
aacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccacatagttatctcgttattga |
43137 |
T |
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| Q |
317 |
a----attacaaccatttatcgccccccaaatggcccaaatcacaacctcccaaatcaaccgcaatccctttcgaa |
388 |
Q |
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| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
43136 |
aattaattacaaccatttatcgccccccaaatgacgcaaatcacaacctcccaaatcaaccgcaatccctttcgaa |
43061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 38092707 - 38093081
Alignment:
| Q |
18 |
aaccctgctgccatgacatcagcctcaccaaaacacaaggcaaaaggaagacaacctgctacacacgcagaggacagcggcccctacgagtgacataatt |
117 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||| |
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| T |
38092707 |
aaccctgctgccatgacagcagcctcaccaaaa-acaaggcaaaaggaagacaacctgctacagacgcacaggacagcagcccctacgagtgacagaatt |
38092805 |
T |
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| Q |
118 |
caaccacaacctaaac-----cnnnnnnncagcaacaaacatgtg-agtcgacgaacaaacttcgcctcaacaagaattcccgagagctccaacaccatt |
211 |
Q |
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|||||| | ||||||| | ||||| |||||| ||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
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| T |
38092806 |
caaccatagcctaaacaataacaaaaaaacagcagcaaacacgtgcagtcgacgaacaaacatcgcctcaataagcattcccgagagctccaacaccatt |
38092905 |
T |
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| Q |
212 |
cataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccacatag-ttatctcgt |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
38092906 |
cataaaacatacatgccgaaatattaaatctccctaataaccacttccatgatataaccttaacctcctccactaactcatcccacatagtttatctcgt |
38093005 |
T |
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| Q |
311 |
tattgaaattacaaccatttatcgccccccaaatggcccaaatcacaacctcccaaatcaaccgcaatccctttcg |
386 |
Q |
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|||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
38093006 |
tattgaaattacaaccatttatcgtcctccaaatgacccaaatcacaacctcccaaatcaaccgcaacccctttcg |
38093081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 201 - 383
Target Start/End: Original strand, 7114969 - 7115151
Alignment:
| Q |
201 |
ccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccacata |
300 |
Q |
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||||||||| || || ||||| || ||||| |||||||||||||||||||||||| || | ||||||||||| ||||| |||||||||||||||||| || |
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| T |
7114969 |
ccaacaccactcgtagaacatgcaagccgggatattaaatctccctaataaccacctccacgacataaccttgacctcctccactaactcatcccaccta |
7115068 |
T |
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| Q |
301 |
gttatctcgttattgaaattacaaccatttatcgccccccaaatggcccaaatcacaacctcccaaatcaaccgcaatccctt |
383 |
Q |
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| |||||| || |||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
7115069 |
gctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatcaacctcattccctt |
7115151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 11239379 - 11239476
Alignment:
| Q |
201 |
ccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccaca |
298 |
Q |
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||||||||| || ||| |||| || ||||||| ||||||||| ||||| | |||| || |||||| |||||| ||||| ||||||||||||||||||| |
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| T |
11239379 |
ccaacaccactcgtaatacatgcaagccggcacattaaatcttcctaacacccacctccaagacaaaaccttcacctcctccactaactcatcccaca |
11239476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 36517622 - 36517530
Alignment:
| Q |
196 |
gagctccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaac |
288 |
Q |
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|||| ||||||||| |||||| ||||||||||||| | ||||||||||||||| | |||| || |||||| ||| || ||||| ||||||||| |
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| T |
36517622 |
gagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccactaac |
36517530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 383
Target Start/End: Original strand, 32699516 - 32699688
Alignment:
| Q |
211 |
tcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccacatagttatctcgt |
310 |
Q |
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||||| |||||||||||||| || || ||||| ||||| |||||| | ||||||| ||||||||||| |||| ||| ||||||||| | || |||| | |
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| T |
32699516 |
tcatacaacatacatgccggaatgttgaatcttcctaacaaccacctacaagacatcaccttaacctcctccattaagtcatcccaccttgtattctcat |
32699615 |
T |
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| Q |
311 |
tattgaaattacaaccatttatcgccccccaaatggcccaaatcacaacctcccaaatcaaccgcaatccctt |
383 |
Q |
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|||| ||| | || || ||| | ||| |||||| |||||||||||| ||||| ||||| ||| ||||||| |
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| T |
32699616 |
tattaaaaatgcacccgtttcttgccttccaaattacccaaatcacaagctcccgaatcatacgcgatccctt |
32699688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 39845208 - 39845112
Alignment:
| Q |
201 |
ccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccac |
297 |
Q |
| |
|
||||| |||||||||||||||||| ||||| | ||| ||||| ||||| | | || || ||||||| || || ||||| ||||| |||||||||||| |
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| T |
39845208 |
ccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacatcacttttacctcctccaccaactcatcccac |
39845112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 1547932 - 1547836
Alignment:
| Q |
201 |
ccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccac |
297 |
Q |
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||||| |||||||||||||||||| ||||| | ||| ||||| ||||| | | || | ||||||| || || ||||| ||||| |||||||||||| |
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| T |
1547932 |
ccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaaccttcaagacatcacttttacctcctccaccaactcatcccac |
1547836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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