View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14493_high_21 (Length: 391)
Name: NF14493_high_21
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 12607986 - 12608319
Alignment:
| Q |
14 |
agagtatggttttattaggctgttcagctttattgggtattttagtctacagagaagttttcactgcaaacatttagaggcttttgagttttgacgattc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12607986 |
agagtatggttttattaggctgttcagctttattgagtattttactctacagagaagttttcactgcaaacatttagaggcttttgagttttgacgattc |
12608085 |
T |
|
| Q |
114 |
aacgatatacaattcaagtatctgagtttgagttgttggtgcacccttccttgcctgcattctagcttaccttccttcattcaccccaattcttacgcct |
213 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12608086 |
aaggatatacaattcgagtatctgagtttgagttgttggtgcacccttccttggctgcattctagcttaccttccttcattcaccccaattcttacgcct |
12608185 |
T |
|
| Q |
214 |
ttatttcctccgtaaacaaacttagatcaaacctttaatttagatggaaattatctatttgcgaacttaatatacattctgtaattgtaactttgattgt |
313 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12608186 |
ttatttcctccataaacaaacttagatgaaacctttaatttagatggaaattatccatttgcgaacttaatatacattcagtaattgtaactttgattgc |
12608285 |
T |
|
| Q |
314 |
tctatgtagcgaagaaaaacatataggaacagac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12608286 |
tctatgtagcgaagaaaaacatataggaacagac |
12608319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 16678203 - 16678111
Alignment:
| Q |
234 |
cttagatcaaacctttaatttagatggaaattatctatttgcgaacttaatata----cattctgtaattgtaactttgattgttctatgtagc |
323 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||| |||| | |||||||||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16678203 |
cttagatcaaacctttaatt-agatcgaaatgttctttttgtggacttaatataataacattgtgtgattgtaactttgattgttctatgtagc |
16678111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University