View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_high_30 (Length: 299)
Name: NF14493_high_30
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 935348 - 935625
Alignment:
| Q |
1 |
caacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttacccca |
100 |
Q |
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|||||||||||| |||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935348 |
caacaagagcttgaagcctttccaaggattgaaattcactgaatgcaa------ccttaaccatttgtttcacagcacatgtggcaatccctttacccca |
935441 |
T |
|
| Q |
101 |
atatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935442 |
atatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcg |
935541 |
T |
|
| Q |
201 |
ttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935542 |
ttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggt |
935625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 925886 - 926172
Alignment:
| Q |
1 |
caacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttacccca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
925886 |
caacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacacgtggcaatccctttacccca |
925985 |
T |
|
| Q |
101 |
atatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcg |
200 |
Q |
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| T |
925986 |
gtatttagaggctagaacataaccaatttctgcacatttgtacctgctcttatcatgaagtgaactcgagaacaacttaatacacccaataacatgatca |
926085 |
T |
|
| Q |
201 |
ttatggcatattgctttgca---acgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggt |
284 |
Q |
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|||||||||||||||||||| ||||||| | | | | ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
926086 |
ttatggcatattgctttgcattgtagtagatattcactttctatattttcaatgaagttgatgccttggtctttgctggtgtaaggt |
926172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 923857 - 923995
Alignment:
| Q |
1 |
caacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttacccca |
100 |
Q |
| |
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||||||||||||||||||||||||| || || || |||| |||||||| || |||||| |||||||||| |||| ||||||| |||||||||||| |
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| T |
923857 |
caacaagagcttcaagcctttccaagtaagacaactcacagaatgcaa------ccttaaccacttgtttcacaacacaagtggcaacccctttacccca |
923950 |
T |
|
| Q |
101 |
atatttagaggctagaacatacccaatttctgcacatctgttcct |
145 |
Q |
| |
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| T |
923951 |
atatttagagcctagaacatagccaagttctgcacatttgttcct |
923995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 928218 - 928321
Alignment:
| Q |
1 |
caacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttacccca |
100 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||| |||||||| | |||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
928218 |
caacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaat------cttaacaatttgtttcacagcacatgtgacaatccctttacccca |
928311 |
T |
|
| Q |
101 |
atatttagag |
110 |
Q |
| |
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|||||||||| |
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|
| T |
928312 |
atatttagag |
928321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 940210 - 940308
Alignment:
| Q |
48 |
aatgtaaccataaccatttgtttcacagcacatgtggcaatccctttac-cccaatatttagaggctagaacatacccaatttctgcacatctgttcct |
145 |
Q |
| |
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|||| |||| |||| | |||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||| |||| |||| ||||| ||||||| |
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| T |
940210 |
aatgcaaccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttatagcctagaacatagccaagttctacacatttgttcct |
940308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 280
Target Start/End: Original strand, 939178 - 939410
Alignment:
| Q |
48 |
aatgtaaccataaccatttgtttcacagcacatgtggcaatccctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctac |
147 |
Q |
| |
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|||| |||| |||| | |||||||||| || | ||||| || ||||||||||| |||||||||||||||||||| ||| ||||||| | ||||||| | |
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| T |
939178 |
aatgcaaccttaactacttgtttcacaacatacgtggctattcctttaccccagtatttagaggctagaacataggcaagttctgcagttttgttcctgc |
939277 |
T |
|
| Q |
148 |
tcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatattttt |
247 |
Q |
| |
|
| || |||| | |||| || || || || || ||||||||| ||| |||| |||||||||||||||| | |||| ||||| || ||||||| |
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| T |
939278 |
ttttatcatgaggtgatcttgatttcagagaaacacggccaatagcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtatattttc |
939377 |
T |
|
| Q |
248 |
gatgaagttgatgccttggtctttgctggtgta |
280 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| |
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| T |
939378 |
aatgaagctgatgccttgttctttgctggtgta |
939410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 928387 - 928489
Alignment:
| Q |
182 |
acacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaa |
281 |
Q |
| |
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||| ||||||||| |||| ||| ||||||||||||||||| ||| |||||| | | ||| ||| |||||||||||||| | ||| ||||||||||| |
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| T |
928387 |
acagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaa |
928486 |
T |
|
| Q |
282 |
ggt |
284 |
Q |
| |
|
||| |
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|
| T |
928487 |
ggt |
928489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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